BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2863074	116 (1.180)	9 (0.100)	6/150	NT	7.6%	intergenic (+44/+16)	USA300TCH1516_02707/USA300HOU_RS14670	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2864026	NA (NA)	9 (0.100)	6/150	NT	7.6%	intergenic (‑439/‑19)	USA300HOU_RS14670/USA300HOU_RS14675	hypothetical protein/hypothetical protein

Only 100 of 133 total aligned reads displayed.

ATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863943‑2864116

ataGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGga                                                                                     <  1:2906594/91‑1 (MQ=32)

 taGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgag                                                                                    >  1:211992/1‑91 (MQ=33)

  aGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgaga                                                                                   >  1:1499857/1‑91 (MQ=34)

   gAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgagag                                                                                  <  1:48889/91‑1 (MQ=35)

    aaCACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGgagaga                                                                                 <  1:3640060/91‑1 (MQ=37)

      cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  1:2770601/1‑91 (MQ=39)

      cacCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGAtt                                                                               >  1:3805943/1‑91 (MQ=39)

           ttGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATc                                                                          >  1:4067337/1‑91 (MQ=255)

           ttGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATc                                                                          >  1:3380290/1‑91 (MQ=255)

            tGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCa                                                                         <  1:303947/91‑1 (MQ=255)

             ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        <  1:2748167/91‑1 (MQ=255)

             ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  1:2222619/1‑91 (MQ=255)

             ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        <  1:2747540/91‑1 (MQ=255)

             ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  1:2595661/1‑91 (MQ=255)

             ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  1:2405146/1‑91 (MQ=255)

             ggAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCAt                                                                        >  1:2595648/1‑91 (MQ=255)

              gAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATg                                                                       >  1:2463318/1‑91 (MQ=255)

                  tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  1:179116/1‑91 (MQ=255)

                  tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  1:3642739/1‑91 (MQ=255)

                  tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   <  1:3777587/91‑1 (MQ=255)

                  tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   <  1:137514/91‑1 (MQ=255)

                  tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  1:232277/1‑91 (MQ=255)

                  tATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAt                                                                   >  1:232419/1‑91 (MQ=255)

                   aTTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAtt                                                                  >  1:1653754/1‑91 (MQ=255)

                    tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 <  1:1303124/91‑1 (MQ=255)

                    tttATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAAttt                                                                 <  1:1569735/91‑1 (MQ=255)

                      tATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTag                                                               <  1:1981258/91‑1 (MQ=255)

                        tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTagag                                                             >  1:3944615/1‑91 (MQ=255)

                        tGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTagag                                                             >  1:2415243/1‑91 (MQ=255)

                          aGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGaa                                                           >  1:2821648/1‑91 (MQ=255)

                           gTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAAt                                                          <  1:737243/91‑1 (MQ=255)

                                aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGATATTGAATCATGAAATTTAGAGAATTAGTa                                                     >  1:3326764/1‑91 (MQ=255)

                                aTCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGACATTGAATCATGAAATTTAGAGAATTAGTa                                                     >  1:3326706/1‑91 (MQ=255)

                                 tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    <  1:1371404/91‑1 (MQ=255)

                                 tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    >  1:3840732/1‑91 (MQ=255)

                                 tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaa                                                    >  1:1156750/1‑91 (MQ=255)

                                   gAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTaaaa                                                  <  1:1356744/91‑1 (MQ=255)

                                     aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                >  1:1277444/1‑91 (MQ=255)

                                     aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACa                                                <  1:699305/91‑1 (MQ=255)

                                        tgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATc                                             <  1:1888290/91‑1 (MQ=255)

                                         gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            >  1:1011250/1‑91 (MQ=255)

                                         gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            <  1:1404311/91‑1 (MQ=255)

                                         gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCa                                            >  1:1316013/1‑91 (MQ=255)

                                           tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCata                                          >  1:1815746/1‑91 (MQ=255)

                                             aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATg                                        >  1:2351583/1‑91 (MQ=255)

                                             aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATg                                        >  1:1476806/1‑91 (MQ=255)

                                             aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATg                                        >  1:2895601/1‑91 (MQ=255)

                                             aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATg                                        >  1:833627/1‑91 (MQ=255)

                                             aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATg                                        >  1:2894499/1‑91 (MQ=255)

                                              aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGa                                       <  1:1996782/91‑1 (MQ=255)

                                               cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAg                                      <  1:1607932/91‑1 (MQ=255)

                                                ttGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAgg                                     <  1:3655888/91‑1 (MQ=255)

                                                  gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAt                                   >  1:4108943/1‑91 (MQ=255)

                                                   tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  >  1:4039272/1‑91 (MQ=255)

                                                   tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  >  1:593578/1‑91 (MQ=255)

                                                   tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  <  1:865958/91‑1 (MQ=255)

                                                   tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  <  1:1056014/91‑1 (MQ=255)

                                                   tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAtt                                  <  1:1890274/91‑1 (MQ=255)

                                                    ccAGCTTCATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 <  1:2086963/91‑1 (MQ=255)

                                                    ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGAttt                                 <  1:1354200/91‑1 (MQ=255)

                                                     cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTg                                <  1:1325080/91‑1 (MQ=255)

                                                     cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTg                                <  1:105684/91‑1 (MQ=255)

                                                      aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:1692632/91‑1 (MQ=255)

                                                      aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGa                               <  1:2373796/91‑1 (MQ=255)

                                                        cTTAATTTGACAATCTAAAGATTTATAAAAAATGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaa                             <  1:3536743/91‑1 (MQ=255)

                                                         ttAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaaa                            >  1:759923/1‑91 (MQ=255)

                                                         ttAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaaa                            >  1:489023/1‑91 (MQ=255)

                                                          tAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGaaaaa                           <  1:2568439/91‑1 (MQ=255)

                                                            aTTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAtt                         <  1:3783361/91‑1 (MQ=255)

                                                             tttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAttt                        >  1:782519/1‑91 (MQ=255)

                                                             tttGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAAttt                        <  1:867363/91‑1 (MQ=255)

                                                                gACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGAc                     <  1:1126389/91‑1 (MQ=255)

                                                                 aCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACt                    >  1:681139/1‑91 (MQ=255)

                                                                 aCAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACt                    >  1:929443/1‑91 (MQ=255)

                                                                    aTCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTa                 <  1:1793029/91‑1 (MQ=255)

                                                                     tCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTaa                >  1:1246166/1‑91 (MQ=255)

                                                                      cTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAAc               <  1:34472/91‑1 (MQ=255)

                                                                       tAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACt              <  1:2842118/91‑1 (MQ=255)

                                                                        aaaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACtt             <  1:1929115/91‑1 (MQ=255)

                                                                         aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTg            <  1:2918258/91‑1 (MQ=255)

                                                                         aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTg            >  1:3228145/1‑91 (MQ=255)

                                                                         aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTg            >  1:3228321/1‑91 (MQ=255)

                                                                         aaGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTg            >  1:3230409/1‑91 (MQ=255)

                                                                          aGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTgg           <  1:2843190/91‑1 (MQ=255)

                                                                          aGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTgg           <  1:443598/91‑1 (MQ=255)

                                                                            aTTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGta         >  1:3774497/1‑91 (MQ=39)

                                                                             tttATAATAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTGACTTGGtat        <  1:2084679/91‑1 (MQ=255)

                                                                              ttATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGtata       <  1:877434/91‑1 (MQ=37)

                                                                                 taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    <  1:2424031/91‑1 (MQ=33)

                                                                                 taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    <  1:2454051/91‑1 (MQ=33)

                                                                                 taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    >  1:2482040/1‑91 (MQ=33)

                                                                                 taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    >  1:852982/1‑91 (MQ=33)

                                                                                 taAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACg    >  1:2300833/1‑91 (MQ=33)

                                                                                  aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAGTCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  1:3288177/1‑91 (MQ=17)

                                                                                  aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  1:1733951/1‑91 (MQ=32)

                                                                                  aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  1:1733990/1‑91 (MQ=32)

                                                                                  aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  1:1734171/1‑91 (MQ=32)

                                                                                  aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   <  1:1081082/91‑1 (MQ=32)

                                                                                  aaaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGt   >  1:2840345/1‑91 (MQ=32)

                                                                                   aaaaaGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTc  >  1:1912180/1‑91 (MQ=31)

ATAGAACACCATTGGAAGTATTTATGAGTTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGGAGAGATTGAATCATGAAATTTAGAGAATTAGTAAAACAATCATATGAGGATTTGAAAAATTTGACTGTAACTTGGTATAACGTC  >  USA300TCH1516_ALE/2863943‑2864116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.