| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2866995 | 66 (0.670) | 14 (0.170) | 10/134 | NT | 18.9% | intergenic (‑394/+59) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein |
| ? | USA300TCH1516_ALE | = 2867006 | 65 (0.790) | intergenic (‑405/+48) | USA300HOU_RS14695/noc_2 | hypothetical protein/Nucleoid occlusion protein | |||||
AACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2866897‑2866995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacaaagctAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCAATG < USA300TCH1516_ALE/2867006‑2866916 AACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAG > 1:2044207/1‑91 CTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGAC > 1:383261/1‑91 TAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGC < 1:508185/91‑1 TAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGC < 1:1583464/91‑1 TAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGC > 1:3039170/1‑91 ATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACA < 1:130616/91‑1 ATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACA < 1:3810787/91‑1 ATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACA < 1:1978804/91‑1 ATTGATTTATGAACCAGCCTGATCAACTTAAAAAAAAAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACA < 1:1940375/91‑1 TTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACAG < 1:2343788/91‑1 TTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACAG < 1:2343668/91‑1 TGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACAGC < 1:1824923/91‑1 ATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACAGCTT < 1:958626/91‑1 TTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACAGCTTT < 1:2465840/91‑1 TTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGT < 1:1505874/91‑1 TGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTCT < 1:2052839/91‑1 TACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTT < 1:557471/91‑1 CAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTT < 1:2912543/91‑1 AAACAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGAT > 1:3576239/1‑91 AAAAAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGC < 1:1588051/91‑1 AAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGG < 1:1317325/91‑1 AAAAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGG < 1:3406277/91‑1 AAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTA > 1:1887611/1‑91 AAAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTA > 1:810293/1‑91 AAGACAACGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTAC < 1:2065839/91‑1 AAGACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTAC > 1:3825816/1‑91 AGACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACA > 1:2423452/1‑91 ACAAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATA > 1:3920094/1‑91 AAAGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATAAGGCTGGTACATAAA < 1:1017874/91‑1 AGCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATC > 1:733083/1‑91 GCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCA < 1:1422455/91‑1 GCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCA > 1:1813186/1‑91 GCTAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCA > 1:2056914/1‑91 TAAGATCATAACAGCTTTGTC‑TTTTTTTTGTTTTACCTGAAACATAAAAATTTAAATTTATATGTTGATCAGGCCGGTACATAAATCAATG > 1:2817915/1‑91 AACTTCGTAGAGCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAACAAAAAAAAAGACAAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2866897‑2866995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacaaagctAAGATCATAACAGCTTTGTCTTTTTTTTTGTTTTACGTGAAACATAAAAATTTATATTTATATGTTGATCAGGCTGGTACATAAATCAATG < USA300TCH1516_ALE/2867006‑2866916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |