BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2866995	66 (0.670)	14 (0.170)	10/134	NT	18.9%	intergenic (‑394/+59)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein
*	?	USA300TCH1516_ALE	= 2867006	65 (0.790)	14 (0.170)	10/134	NT	18.9%	intergenic (‑405/+48)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein

Only 100 of 107 total aligned reads displayed.

CATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCA  >  USA300TCH1516_ALE/2866916‑2867096

cATTGATTTATGTACCGGCCTGATCAACATATAAATTTAAATTTTTATGTTTCAGGTAAAAC‑AAAAAAAA‑GACAAAGCTGTTATGATCTTa                                                                                           >  1:2817915‑M2/1‑90 (MQ=255)

   tGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagc                                                                                         >  1:2056914‑M2/1‑88 (MQ=255)

   tGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagc                                                                                         <  1:1422455‑M2/91‑4 (MQ=255)

   tGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagc                                                                                         >  1:1813186‑M2/1‑88 (MQ=255)

    gATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagct                                                                                        >  1:733083‑M2/1‑87 (MQ=255)

      tttATGTACCAGCCTTATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagcttt                                                                                      <  1:1017874‑M2/91‑7 (MQ=255)

        tATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgt                                                                                    >  1:3920094‑M2/1‑83 (MQ=255)

          tGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtct                                                                                  >  1:2423452‑M2/1‑81 (MQ=255)

           gTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtctt                                                                                 >  1:3825816‑M2/1‑80 (MQ=255)

           gTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagcgttgtctt                                                                                 <  1:2065839‑M2/91‑12 (MQ=255)

            tACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtcttt                                                                                >  1:810293‑M2/1‑79 (MQ=255)

            tACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtcttt                                                                                >  1:1887611‑M2/1‑79 (MQ=255)

              ccAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtcttttt                                                                              <  1:3406277‑M2/91‑15 (MQ=255)

              ccAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtcttttt                                                                              <  1:1317325‑M2/91‑15 (MQ=255)

               cAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAt                                                                             <  1:516840/91‑1 (MQ=255)

               cAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAt                                                                             <  1:2514195/91‑1 (MQ=255)

                 gCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtctttttttt                                                                           <  1:1588051‑M2/91‑18 (MQ=255)

                 gCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgt                                                                           <  1:351134/91‑1 (MQ=255)

                 gCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgt                                                                           >  1:1582151/1‑91 (MQ=255)

                  ccTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgtt                                                                          >  1:3745916/1‑90 (MQ=255)

                  ccTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgtg                                                                          <  1:2556031/91‑1 (MQ=255)

                  ccTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgtg                                                                          <  1:2555574/91‑1 (MQ=255)

                   cTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt                                                                         <  1:1820273/91‑1 (MQ=255)

                   cTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt                                                                         <  1:3021901/91‑1 (MQ=255)

                      tgaaaCATAAAAATTTATATTTATATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAg                                                                      >  1:3078359/4‑91 (MQ=37)

                      aTCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTat                                                                      >  1:212162/1‑90 (MQ=255)

                      aTCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAg                                                                      >  1:212459/1‑91 (MQ=255)

                      aTCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACagctttgtctttttttttgttt                                                                      >  1:3576239‑M2/1‑69 (MQ=255)

                         aaCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtca                                                                   <  1:3352528/91‑1 (MQ=255)

                         aaCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtca                                                                   >  1:556077/1‑91 (MQ=255)

                          aCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcat                                                                  >  1:2556862/1‑91 (MQ=255)

                          aCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcat                                                                  >  1:1606379/1‑91 (MQ=255)

                           cATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatc                                                                 >  1:956755/1‑91 (MQ=255)

                            atataaatataaATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatca                                                                <  1:1807341/91‑1 (MQ=255)

                            atataaatataaATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatca                                                                <  1:1760452/91‑1 (MQ=255)

                             tataaatataaaTTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTTTTATTcatcat                                                               >  1:3561157/1‑91 (MQ=255)

                             tataaatataaaTTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTcatcat                                                               >  1:3560865/1‑91 (MQ=255)

                              ataaatataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTATTCTTCATg                                                              >  1:2334458/1‑91 (MQ=255)

                                  atataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATTtata                                                          >  1:1411455/1‑91 (MQ=255)

                                    ataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACg                                                        >  1:2182188/1‑91 (MQ=255)

                                     taaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGa                                                       >  1:1218319/1‑91 (MQ=255)

                                      aaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGAc                                                      <  1:1596908/91‑1 (MQ=255)

                                         tttttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATc                                                   >  1:3802766/1‑91 (MQ=255)

                                          ttttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATcc                                                  <  1:2598786/91‑1 (MQ=255)

                                          ttttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATcc                                                  <  1:1652328/91‑1 (MQ=255)

                                          ttttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATcc                                                  <  1:4116208/91‑1 (MQ=255)

                                           tttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCct                                                 >  1:2242504/1‑91 (MQ=255)

                                           tttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCct                                                 >  1:865935/1‑91 (MQ=255)

                                            ttATGTTTCACGTAAAACAAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCct                                                 <  1:3784012/91‑1 (MQ=255)

                                             tATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctac                                               <  1:644223/91‑1 (MQ=255)

                                             tATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctac                                               >  1:2996128/1‑91 (MQ=255)

                                              aTGTCTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctact                                              >  1:3274636/1‑91 (MQ=255)

                                               tGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctacta                                             <  1:2184350/91‑1 (MQ=255)

                                                gTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactac                                            >  1:2510095/1‑91 (MQ=255)

                                                gTTTCACGTAAAAC‑AAAAAAAAAGAAAAAGCTGTTATGATTTTAGCTTTGTCTTTTATGTGTTAGTCATCTTGTATACGACATCctactac                                            >  1:2510347/1‑91 (MQ=255)

                                                 tttCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactact                                           <  1:3669854/91‑1 (MQ=255)

                                                 tttCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactact                                           <  1:662326/91‑1 (MQ=255)

                                                      cGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGt                                      <  1:3472947/91‑1 (MQ=255)

                                                      cGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGt                                      <  1:2541953/91‑1 (MQ=255)

                                                       gTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGtt                                     <  1:2978031/91‑1 (MQ=255)

                                                       gTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGtt                                     <  1:2978192/91‑1 (MQ=255)

                                                         aaaaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTta                                   <  1:3944598/91‑1 (MQ=255)

                                                          aaaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtat                                  >  1:2373502/1‑91 (MQ=255)

                                                           aaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtata                                 >  1:3126481/1‑91 (MQ=255)

                                                           aaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtata                                 >  1:234215/1‑91 (MQ=255)

                                                           aaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtata                                 >  1:714297/1‑91 (MQ=255)

                                                           aaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtata                                 >  1:2224995/1‑91 (MQ=255)

                                                            aC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtatat                                <  1:3168396/91‑1 (MQ=255)

                                                             c‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtatata                               <  1:3708655/91‑1 (MQ=255)

                                                               aaaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTatatat                              <  1:2869825/91‑1 (MQ=255)

                                                               aaaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTatatat                              <  1:3394262/91‑1 (MQ=255)

                                                               aaaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTatatat                              <  1:3394821/91‑1 (MQ=255)

                                                                   aaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGa                          >  1:3797755/1‑91 (MQ=255)

                                                                     aaaGACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggta                        <  1:557471‑M2/91‑69 (MQ=255)

                                                                       aGACAAAGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca                      <  1:2052839‑M2/91‑71 (MQ=255)

                                                                       aGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttt                      <  1:2871577/91‑1 (MQ=255)

                                                                         aCAAAGCTGTTATGATCTTagctttgtcttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataa                    <  1:1505874‑M2/91‑73 (MQ=255)

                                                                         aCAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttttt                    <  1:1756294/91‑1 (MQ=255)

                                                                         aCAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttttt                    <  1:1756613/91‑1 (MQ=255)

                                                                           aaaGCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaa                  <  1:2465840‑M2/91‑75 (MQ=255)

                                                                            aaGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTAtt                 <  1:6444/91‑1 (MQ=255)

                                                                            aaGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTAtt                 >  1:2282128/1‑91 (MQ=255)

                                                                            aaGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTAtt                 >  1:2284211/1‑91 (MQ=255)

                                                                              gCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatca               <  1:1824923‑M2/91‑78 (MQ=255)

                                                                               cTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaa              <  1:2343668‑M2/91‑79 (MQ=255)

                                                                               cTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCa              <  1:3151523/91‑1 (MQ=255)

                                                                                tGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttttttttttaagttgatcaggctggttcataaatcaat             <  1:1940375‑M2/91‑80 (MQ=255)

                                                                                tGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaat             <  1:3810787‑M2/91‑80 (MQ=255)

                                                                                tGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaat             <  1:130616‑M2/91‑80 (MQ=255)

                                                                                tGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaat             <  1:1978804‑M2/91‑80 (MQ=255)

                                                                                tGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCat             >  1:1468931/1‑91 (MQ=255)

                                                                                 gTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCata            >  1:4072558/1‑91 (MQ=255)

                                                                                 gTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCata            >  1:1274297/1‑91 (MQ=255)

                                                                                   tATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCataat          <  1:640635/91‑1 (MQ=255)

                                                                                    aTGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCataata         >  1:2278030/1‑91 (MQ=255)

                                                                                     tGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCAtaataa        >  1:2070710/1‑91 (MQ=255)

                                                                                          ttAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTc   >  1:1985651/1‑91 (MQ=255)

                                                                                          ttAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTc   <  1:2622439/91‑1 (MQ=255)

                                                                                           tAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCa  >  1:1320044/1‑91 (MQ=255)

                                                                                           tAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCa  >  1:1945928/1‑91 (MQ=255)

CATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCATAATAATCTTCA  >  USA300TCH1516_ALE/2866916‑2867096

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.