BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2866995	66 (0.670)	14 (0.170)	10/134	NT	18.9%	intergenic (‑394/+59)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein
*	?	USA300TCH1516_ALE	= 2867006	65 (0.790)	14 (0.170)	10/134	NT	18.9%	intergenic (‑405/+48)	USA300HOU_RS14695/noc_2	hypothetical protein/Nucleoid occlusion protein

Only 100 of 132 total aligned reads displayed.

GCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCAT  >  USA300TCH1516_ALE/2866908‑2867085

  aTAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTAt                                                                                       >  1:405358/1‑91 (MQ=255)

  aTAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTAt                                                                                       >  1:405161/1‑91 (MQ=255)

       aCATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCt                                                                                  >  1:3898030/1‑91 (MQ=255)

       aCATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCt                                                                                  <  1:1801126/91‑1 (MQ=255)

       aCATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCt                                                                                  >  1:1752381/1‑91 (MQ=255)

        cATTGATTTATGTACCGGCCTGATCAACATATAAATTTAAATTTTTATGTTTCAGGTAAAAC‑AAAAAAAA‑GACAAAGCTGTTATGATCTTa                                                                                >  1:2817915‑M2/1‑90 (MQ=255)

         aTTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTaagatcataaca                                                                                <  1:130616‑M1/91‑13 (MQ=255)

         aTTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTaagatcataaca                                                                                <  1:1978804‑M1/91‑13 (MQ=255)

          ttGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTaagatcataacag                                                                               <  1:2343788‑M1/91‑14 (MQ=255)

           tGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagc                                                                              <  1:1422455‑M2/91‑4 (MQ=255)

           tGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagc                                                                              >  1:2056914‑M2/1‑88 (MQ=255)

           tGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagc                                                                              >  1:1813186‑M2/1‑88 (MQ=255)

            gATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagct                                                                             >  1:733083‑M2/1‑87 (MQ=255)

             aTTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTaagatcataacagctt                                                                            <  1:958626‑M1/91‑17 (MQ=255)

              tttATGTACCAGCCTTATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagcttt                                                                           <  1:1017874‑M2/91‑7 (MQ=255)

              tttATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTaagatcataacagcttt                                                                           <  1:2465840‑M1/91‑18 (MQ=255)

               ttATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑‑AAAAAAAAGACAAAGCTaagatcataacagctttgt                                                                         <  1:1505874‑M1/91‑20 (MQ=255)

                tATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgt                                                                         >  1:3920094‑M2/1‑83 (MQ=255)

                  tGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTaagatcataacagctttgtct                                                                       <  1:2052839‑M1/91‑22 (MQ=255)

                  tGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtct                                                                       >  1:2423452‑M2/1‑81 (MQ=255)

                   gTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtctt                                                                      >  1:3825816‑M2/1‑80 (MQ=255)

                   gTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagcgttgtctt                                                                      <  1:2065839‑M2/91‑12 (MQ=255)

                    tACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTaagatcataacagctttgtcttt                                                                     <  1:557471‑M1/91‑24 (MQ=255)

                    tACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtcttt                                                                     >  1:1887611‑M2/1‑79 (MQ=255)

                      ccAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtcttttt                                                                   <  1:1317325‑M2/91‑15 (MQ=255)

                      ccAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtcttttt                                                                   <  1:3406277‑M2/91‑15 (MQ=255)

                       cAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAt                                                                  <  1:516840/91‑1 (MQ=255)

                       cAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAt                                                                  <  1:2514195/91‑1 (MQ=255)

                         gCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTagctttgtctttttttt                                                                <  1:1588051‑M2/91‑18 (MQ=255)

                         gCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgt                                                                <  1:350858/91‑1 (MQ=255)

                         gCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgt                                                                >  1:1582151/1‑91 (MQ=255)

                         gCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgt                                                                <  1:351134/91‑1 (MQ=255)

                          ccTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgtt                                                               >  1:3745916/1‑90 (MQ=255)

                          ccTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgtg                                                               <  1:2555574/91‑1 (MQ=255)

                          ccTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTAtgtg                                                               <  1:2556031/91‑1 (MQ=255)

                           cTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt                                                              <  1:3021901/91‑1 (MQ=255)

                           cTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATgtgt                                                              <  1:1820273/91‑1 (MQ=255)

                              tgaaaCATAAAAATTTATATTTATATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAg                                                           >  1:3078359/4‑91 (MQ=37)

                              aTCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTat                                                           >  1:212162/1‑90 (MQ=255)

                              aTCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAg                                                           >  1:212459/1‑91 (MQ=255)

                              aTCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTAAGATCATAACagctttgtctttttttttgttt                                                           >  1:3576239‑M2/1‑69 (MQ=255)

                                 aaCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtca                                                        <  1:3352528/91‑1 (MQ=255)

                                 aaCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtca                                                        >  1:556077/1‑91 (MQ=255)

                                  aCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcat                                                       >  1:2556862/1‑91 (MQ=255)

                                  aCATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcat                                                       >  1:1606379/1‑91 (MQ=255)

                                   cATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatc                                                      >  1:956755/1‑91 (MQ=255)

                                    atataaatataaATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGtcatca                                                     <  1:1760452/91‑1 (MQ=255)

                                     tataaatataaaTTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTcatcat                                                    >  1:3560865/1‑91 (MQ=255)

                                      ataaatataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTATTCTTCATg                                                   >  1:2334458/1‑91 (MQ=255)

                                          atataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATTtata                                               >  1:1411455/1‑91 (MQ=255)

                                           tataaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATAc                                              <  1:2058027/91‑1 (MQ=255)

                                             taaatTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGa                                            >  1:1218319/1‑91 (MQ=255)

                                                 tttttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATc                                        >  1:3802766/1‑91 (MQ=255)

                                                  ttttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATcc                                       <  1:1652328/91‑1 (MQ=255)

                                                  ttttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATcc                                       <  1:2598786/91‑1 (MQ=255)

                                                   tttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCct                                      >  1:2242504/1‑91 (MQ=255)

                                                   tttATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCct                                      >  1:865935/1‑91 (MQ=255)

                                                    ttATGTTTCACGTAAAACAAAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCct                                      <  1:3784012/91‑1 (MQ=255)

                                                     tATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctac                                    <  1:644223/91‑1 (MQ=255)

                                                      aTGTCTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctact                                   >  1:3274636/1‑91 (MQ=255)

                                                       tGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctacta                                  <  1:2184350/91‑1 (MQ=255)

                                                        gTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactac                                 >  1:2510095/1‑91 (MQ=255)

                                                        gTTTCACGTAAAAC‑AAAAAAAAAGAAAAAGCTGTTATGATTTTAGCTTTGTCTTTTATGTGTTAGTCATCTTGTATACGACATCctactac                                 >  1:2510347/1‑91 (MQ=255)

                                                         tttCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactact                                <  1:3669854/91‑1 (MQ=255)

                                                         tttCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCctactact                                <  1:662326/91‑1 (MQ=255)

                                                               gTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGtt                          <  1:2978031/91‑1 (MQ=255)

                                                               gTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGtt                          <  1:2978192/91‑1 (MQ=255)

                                                                  aaaC‑AAAAAAAAAGACAAAGCTgttatgatcttagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgat                       >  1:3576239‑M1/1‑22 (MQ=255)

                                                                   aaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtata                      >  1:3126481/1‑91 (MQ=255)

                                                                   aaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtata                      >  1:4021669/1‑91 (MQ=255)

                                                                   aaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtata                      >  1:2224995/1‑91 (MQ=255)

                                                                   aaC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtata                      >  1:234215/1‑91 (MQ=255)

                                                                    aC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTtatat                     <  1:3168396/91‑1 (MQ=255)

                                                                       aaaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTatatat                   <  1:2869825/91‑1 (MQ=255)

                                                                       aaaaaaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTatatat                   <  1:3394821/91‑1 (MQ=255)

                                                                        aaaaaaaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggc                  <  1:1588051‑M1/91‑75 (MQ=255)

                                                                         aaaaaaaGACAAAGCTGTTATGATCTTagctttgtcttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctg                 <  1:2912543‑M2/91‑65 (MQ=255)

                                                                           aaaaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctgg               <  1:1317325‑M1/91‑78 (MQ=255)

                                                                           aaaaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctgg               <  1:3406277‑M1/91‑78 (MQ=255)

                                                                           aaaaaGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGa               >  1:3797755/1‑91 (MQ=255)

                                                                             aaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggta             >  1:810293‑M1/1‑12 (MQ=255)

                                                                             aaaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggta             >  1:1887611‑M1/1‑12 (MQ=255)

                                                                              aaGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtac            >  1:3825816‑M1/1‑11 (MQ=255)

                                                                               aGACAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtaca           >  1:2423452‑M1/1‑10 (MQ=255)

                                                                               aGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttt           <  1:2871577/91‑1 (MQ=255)

                                                                                 aCAAAGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacata         >  1:3920094‑M1/1‑8 (MQ=255)

                                                                                 aCAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAAttttt         <  1:1756613/91‑1 (MQ=255)

                                                                                   aaaGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgataaggctggtacataaa       <  1:1017874‑M1/91‑86 (MQ=255)

                                                                                    aaGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTAtt      >  1:2284211/1‑91 (MQ=255)

                                                                                    aaGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTAtt      <  1:6444/91‑1 (MQ=255)

                                                                                     aGCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatc     >  1:733083‑M1/1‑4 (MQ=255)

                                                                                      gCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatca    >  1:2056914‑M1/1‑3 (MQ=255)

                                                                                      gCTaagatcataacagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatca    >  1:1813186‑M1/1‑3 (MQ=255)

                                                                                      gCTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatca    <  1:1824923‑M2/91‑78 (MQ=255)

                                                                                       cTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaa   <  1:2343788‑M2/91‑79 (MQ=255)

                                                                                       cTGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaa   <  1:2343668‑M2/91‑79 (MQ=255)

                                                                                        tGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttttttttttaagttgatcaggctggttcataaatcaat  <  1:1940375‑M2/91‑80 (MQ=255)

                                                                                        tGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaat  <  1:3810787‑M2/91‑80 (MQ=255)

                                                                                        tGTTATGATCTTagctttgtctttttttttgttttacgtgaaacataaaaatttatatttatatgttgatcaggctggtacataaatcaat  <  1:1978804‑M2/91‑80 (MQ=255)

                                                                                        tGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCat  >  1:1468931/1‑91 (MQ=255)

GCATAGAACATTGATTTATGTACCAGCCTGATCAACATATAAATATAAATTTTTATGTTTCACGTAAAAC‑AAAAAAAAAGACAAAGCTGTTATGATCTTAGCTTTGTCTTTTATGTGTTAGTCATCATGTATACGACATCCTACTACTAACGTTTATATATTCGAATTTTTATTTCAT  >  USA300TCH1516_ALE/2866908‑2867085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.