New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 1 =0 (0.000)6 (0.020)
+AAACTTATAAAAGGGAAAATATAGC		 5/110 NT 6.6% intergenic (–/‑231) –/repA –/replication protein A
?CP000731 26987 = 249 (0.710)intergenic (‑140/–) USA300HOU_pUSA300HOUMR0033/– partitioning protein/–

GTTATATTAAGTTTATTATAGCACTTTAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/31‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTAT  >  CP000731/26987‑27035
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GTTATATTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAAGCTAT                <  1:1691396/91‑1
      TTAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTC          <  1:1049968/91‑1
       TAAGTTTATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCC         <  1:2911617/91‑1
             TATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTA   <  1:19755/91‑1
             TATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTA   <  1:3871153/91‑1
              ATTATAGCACTTTAAATAAACTTATAAAAGGGAAAATATAGCTTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTAT  <  1:3079661/91‑1
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GTTATATTAAGTTTATTATAGCACTTTAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/31‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTAT  >  CP000731/26987‑27035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.