BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	1 =	0 (0.000)	6 (0.020) +AAACTTATAAAAGGGAAAATATAGC	5/110	NT	6.6%	intergenic (–/‑231)	–/repA	–/replication protein A
*	?	CP000731	26987 =	249 (0.710)	6 (0.020) +AAACTTATAAAAGGGAAAATATAGC	5/110	NT	6.6%	intergenic (‑140/–)	USA300HOU_pUSA300HOUMR0033/–	partitioning protein/–

Only 100 of 427 total aligned reads displayed.

AGCTTATAATGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/26897‑27041

aGCTTATAATGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGatat                                                                                          >  1:3792431/1‑91 (MQ=255)

 gCTTATAATGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATAtt                                                                                         <  1:266628/91‑1 (MQ=255)

  cTTATAATGCTTAATAATAAAGTGATTAATATATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATAttt                                                                                        >  1:3433221/1‑91 (MQ=255)

  cTTATAATGCTTAATAATAAAGTGATTAATAAATACAAATAAACATCCGTCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATAttt                                                                                        <  1:1041123/91‑1 (MQ=255)

   ttATAATGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTa                                                                                       <  1:4008725/91‑1 (MQ=255)

    tataATGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTAt                                                                                      <  1:62515/91‑1 (MQ=255)

     ataATGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATc                                                                                     <  1:2778535/91‑1 (MQ=255)

       aaTGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCaa                                                                                   >  1:2633200/1‑91 (MQ=255)

       aaTGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCaa                                                                                   >  1:2794872/1‑91 (MQ=255)

       aaTGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCaa                                                                                   <  1:524811/91‑1 (MQ=255)

       aaTGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCaa                                                                                   <  1:1904143/91‑1 (MQ=255)

        aTGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAg                                                                                  <  1:686713/91‑1 (MQ=255)

         tGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAgg                                                                                 <  1:1400314/91‑1 (MQ=255)

            ttAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGtt                                                                              <  1:2209539/91‑1 (MQ=255)

            ttAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGtt                                                                              <  1:2429620/91‑1 (MQ=255)

             taatcataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGttt                                                                             >  1:3275627/1‑91 (MQ=255)

             taataataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGttt                                                                             <  1:1243508/91‑1 (MQ=255)

              aataataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTta                                                                            <  1:881086/91‑1 (MQ=255)

              aataataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTta                                                                            <  1:381455/91‑1 (MQ=255)

               ataataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTtat                                                                           <  1:2837895/91‑1 (MQ=255)

                taataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTtata                                                                          >  1:1988531/1‑91 (MQ=255)

                taataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTtata                                                                          <  1:1300288/91‑1 (MQ=255)

                taataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTtata                                                                          <  1:1003480/91‑1 (MQ=255)

                 aataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATaa                                                                         <  1:304149/91‑1 (MQ=255)

                 aataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATaa                                                                         <  1:32408/91‑1 (MQ=255)

                 aataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATaa                                                                         <  1:1196367/91‑1 (MQ=255)

                 aataaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATaa                                                                         <  1:1439470/91‑1 (MQ=255)

                   taaAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAAc                                                                       <  1:2866794/91‑1 (MQ=255)

                    aaaGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAAcc                                                                      >  1:2490806/1‑91 (MQ=255)

                    aaaGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAAcc                                                                      >  1:399151/1‑91 (MQ=255)

                    aaaGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAAcc                                                                      >  1:185520/1‑91 (MQ=255)

                    aaaGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAAcc                                                                      <  1:3463978/91‑1 (MQ=255)

                    aaaGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAAcc                                                                      <  1:3829961/91‑1 (MQ=255)

                     aaGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAAccc                                                                     <  1:320348/91‑1 (MQ=255)

                       gTGATTACTAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCtt                                                                   <  1:2079023/91‑1 (MQ=255)

                       gTGATTAATAAATAAAAGTAAACATCCATCAAACTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCtt                                                                   <  1:3553275/91‑1 (MQ=255)

                       gTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCtt                                                                   <  1:3952210/91‑1 (MQ=255)

                       gTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCtt                                                                   <  1:3234468/91‑1 (MQ=255)

                              ataaataaAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAg                                                            <  1:747608/91‑1 (MQ=255)

                                 aataaaaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCta                                                         >  1:2158635/1‑91 (MQ=255)

                                 aataaaaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCta                                                         <  1:581287/91‑1 (MQ=255)

                                   taaaaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGTTTTATAAACCCTTGATAAAGCtata                                                       <  1:1521492/91‑1 (MQ=255)

                                   taaaaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCtata                                                       >  1:2038486/1‑91 (MQ=255)

                                   taaaaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCtata                                                       <  1:3670028/91‑1 (MQ=255)

                                    aaaaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGACAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTatat                                                      >  1:3591915/1‑91 (MQ=255)

                                     aaaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATAtt                                                     <  1:420175/91‑1 (MQ=255)

                                      aaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATAttt                                                    >  1:3878109/1‑91 (MQ=255)

                                      aaataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATAttt                                                    <  1:456467/91‑1 (MQ=255)

                                       aataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGTGTTTATAAACCCTTGATAAAGCTATAtttt                                                   <  1:797311/91‑1 (MQ=255)

                                       aataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATAtttt                                                   >  1:1590594/1‑91 (MQ=255)

                                        ataaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTc                                                  >  1:903013/1‑91 (MQ=255)

                                         taaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTcc                                                 >  1:1421553/1‑91 (MQ=255)

                                         taaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTcc                                                 <  1:2271061/91‑1 (MQ=255)

                                          aaaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTccc                                                >  1:1504028/1‑91 (MQ=255)

                                           aaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCt                                               >  1:138821/1‑91 (MQ=255)

                                           aaCATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCt                                               >  1:3637962/1‑91 (MQ=255)

                                             catccatcAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTCTGAACCCTTGATAAAGCTATATTTTCCCttt                                             >  1:3330464/1‑91 (MQ=255)

                                             catccatcAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCttt                                             <  1:2507214/91‑1 (MQ=255)

                                             catccatcAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCttt                                             >  1:1741428/1‑91 (MQ=255)

                                             catccatcAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCttt                                             >  1:550466/1‑91 (MQ=255)

                                               tccatcAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTta                                           <  1:1776474/91‑1 (MQ=255)

                                                attatagcactttaaataaacttataaaagggaaaatatagcTTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTtat                                          <  1:3079661‑M2/49‑1 (MQ=255)

                                                 catcAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTtata                                         >  1:3744421/1‑91 (MQ=255)

                                                  atcAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATaa                                        <  1:1207959/91‑1 (MQ=255)

                                                    cAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGt                                      <  1:1056327/91‑1 (MQ=255)

                                                    cAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGt                                      <  1:1266545/91‑1 (MQ=255)

                                                       ccTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTa                                   >  1:3293062‑M2/1‑90 (MQ=255)

                                                         tttttATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatt                                 >  1:2396226‑M2/1‑88 (MQ=255)

                                                          ttttATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTattt                                >  1:2319107‑M2/1‑87 (MQ=255)

                                                           tttATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTattta                               <  1:108031‑M2/91‑6 (MQ=255)

                                                           tttATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTattta                               >  1:1485784‑M2/1‑86 (MQ=255)

                                                                 aaGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgc                         >  1:47024‑M2/1‑80 (MQ=255)

                                                                 aaGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgc                         >  1:3711612‑M2/1‑80 (MQ=255)

                                                                 aaGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgc                         <  1:3138127‑M2/91‑12 (MQ=255)

                                                                 aaGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgc                         >  1:83174‑M2/1‑80 (MQ=255)

                                                                  aGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgct                        <  1:167201‑M2/91‑13 (MQ=255)

                                                                   gggTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgcta                       <  1:2453719‑M2/91‑14 (MQ=255)

                                                                      tttATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATACGTTTatttaacgtgctataa                    <  1:1967463‑M2/91‑17 (MQ=255)

                                                                       ttATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTGATAAGTTTatttaaagtgctataat                   <  1:3857547‑M2/91‑18 (MQ=255)

                                                                       ttATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTATCCCTTTTATAAGTTTatttaaagtgctataat                   <  1:3399810‑M2/91‑18 (MQ=255)

                                                                        tATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataata                  <  1:1690207‑M2/91‑19 (MQ=255)

                                                                         aTGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataa                 <  1:1063998‑M2/91‑20 (MQ=255)

                                                                          tGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaa                <  1:4090024‑M2/91‑21 (MQ=255)

                                                                            aaaGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaact              <  1:1362880‑M2/91‑23 (MQ=255)

                                                                            aaaGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaact              <  1:360528‑M2/91‑23 (MQ=255)

                                                                               ggTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaa           >  1:1117280‑M2/1‑66 (MQ=255)

                                                                                 tttATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaata         <  1:2524037‑M2/91‑28 (MQ=255)

                                                                                   tATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatata       >  1:3352255‑M2/1‑62 (MQ=255)

                                                                                    aTGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataa      <  1:2713432‑M2/91‑31 (MQ=255)

                                                                                    aTGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataa      <  1:1830226‑M2/91‑31 (MQ=255)

                                                                                     tGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataac     <  1:2934189‑M2/91‑32 (MQ=255)

                                                                                     tGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataac     <  1:2890947‑M2/91‑32 (MQ=255)

                                                                                     tGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataac     >  1:200721‑M2/1‑60 (MQ=255)

                                                                                     tGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataac     <  1:765174‑M2/91‑32 (MQ=255)

                                                                                     tGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataac     <  1:164682‑M2/91‑32 (MQ=255)

                                                                                     tGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataac     <  1:1309793‑M2/91‑32 (MQ=255)

                                                                                     tGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataac     <  1:1032366‑M2/91‑32 (MQ=255)

                                                                                       atatTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataacaa   >  1:2566025‑M2/1‑58 (MQ=255)

                                                                                       atatTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataacaa   <  1:1924913‑M2/91‑34 (MQ=255)

                                                                                        tatTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTTatttaaagtgctataataaacttaatataacaaa  >  1:2186942‑M2/1‑57 (MQ=255)

AGCTTATAATGCTTAATAATAAAGTGATTAATAAATAAAAATAAACATCCATCAACCTTTTTATCAAGGGTTTATGAAAGGTTTATGATATTTATCAAGGGTTTATAAACCCTTGATAAAGCTATATTTTCCCTTTTATAAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/26897‑27041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.