New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 = 648447 (1.270)22 (0.070) 12/148 NT 5.1% coding (417/984 nt) repA replication protein A
?CP000731 = 720 404 (1.250)coding (489/984 nt) repA replication protein A

CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/553‑648
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgaTTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCGC  <  CP000731/720‑632
                                                                                                                                                                                         
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAG                                                                                                <  1:4040297/91‑1
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAG                                                                                                <  1:1803016/91‑1
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAG                                                                                                <  1:1803147/91‑1
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAG                                                                                                <  1:1958124/91‑1
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAG                                                                                                <  1:2164835/91‑1
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAG                                                                                                <  1:2785117/91‑1
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAG                                                                                                >  1:627843/1‑91
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAG                                                                                                <  1:3924998/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGTCGAGAAGGAAGT                                                                                               <  1:3200414/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               >  1:2942699/1‑91
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               <  1:2189304/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               <  1:215395/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               <  1:214504/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               <  1:2013993/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               <  1:1003167/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               <  1:1783578/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               <  1:1783535/91‑1
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               >  1:1452976/1‑91
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGT                                                                                               >  1:1239419/1‑91
 TATATTTAATGAAACCTATTGTCACAGAACGTGATATATACAAAATAGAAACAGAAGAAAACGATATTGAACCTTACGGCGAGAATGAAGT                                                                                               >  1:3860542/1‑91
  ATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTT                                                                                              >  1:2783659/1‑91
  ATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTT                                                                                              <  1:1173004/91‑1
  ATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTT                                                                                              <  1:789627/91‑1
  ATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTT                                                                                              <  1:893546/91‑1
  ATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTT                                                                                              >  1:2098019/1‑91
  ATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTT                                                                                              <  1:1065733/91‑1
   TATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTC                                                                                             <  1:2409770/91‑1
   TATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTC                                                                                             <  1:3479331/91‑1
   TATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTC                                                                                             >  1:616553/1‑91
   TATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTC                                                                                             <  1:2824474/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:1043957/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:2687425/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            >  1:118047/1‑91
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:300588/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:301252/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:1043647/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            >  1:3305268/1‑91
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:891763/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:3894903/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:1042945/91‑1
    ATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCG                                                                                            <  1:1615649/91‑1
     TTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGA                                                                                           >  1:191006/1‑91
     TTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGA                                                                                           >  1:3569441/1‑91
     TTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGA                                                                                           >  1:2399235/1‑91
     TTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGA                                                                                           <  1:2761018/91‑1
        AATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGATTT                                                                                        <  1:1711172/91‑1
        AATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGATTT                                                                                        <  1:1274990/91‑1
         ATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGATTTT                                                                                       <  1:4069983/91‑1
            AAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGA                                                                                    <  1:558360/91‑1
             AACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAA                                                                                   <  1:1504064/91‑1
             AACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAA                                                                                   <  1:3791629/91‑1
             AACCTATTGTCACAGAACGTGATATGTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAA                                                                                   <  1:1164898/91‑1
              ACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAAC                                                                                  <  1:3951196/91‑1
              ACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAAC                                                                                  <  1:801535/91‑1
              ACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAAC                                                                                  <  1:1728773/91‑1
              ACCTATTATCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAAC                                                                                  <  1:2006494/91‑1
              ACCTATTATCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAAC                                                                                  <  1:2006833/91‑1
               CCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAACT                                                                                 <  1:4095384/91‑1
               CCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGAATTTCGAACT                                                                                 <  1:2877327/91‑1
                CTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAACTT                                                                                <  1:2894562/91‑1
                             ACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGAAAATCGAACTTCTGGACGTTCGAT                                                                   <  1:3003332/91‑1
                              CGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGATTTTCGAACTTCTGGACGTTCGATT                                                                  <  1:2088103/91‑1
                              CGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGATTTTCGAACTTCTGGACGTTCGATT                                                                  <  1:2088160/91‑1
                                     TTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAAC                                                           <  1:673475/91‑1
                                      TTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACT                                                          <  1:3040404/91‑1
                                                       AAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTT                                         <  1:3091525/91‑1
                                                       AAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTT                                         <  1:3091322/91‑1
                                                             ACGATGTTGAACCTTACGGCGAGAAGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACT                                   <  1:1977350/91‑1
                                                                             CGGCGAGAAGGAAGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTT                   <  1:1982313/91‑1
                                                                             CGGCGAGAAGGAAGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTT                   <  1:269773/91‑1
                                                                                          GTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTC      <  1:557223/91‑1
                                                                                          GTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTC      <  1:3705672/91‑1
                                                                                          GTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTC      <  1:1764558/91‑1
                                                                                          GTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTC      <  1:304952/91‑1
                                                                                          GTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTC      >  1:286075/1‑91
                                                                                          GTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTC      <  1:2808934/91‑1
                                                                                          GTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTC      <  1:711539/91‑1
                                                                                          GTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACGTCCaga      >  1:1350610/1‑88
                                                                                           TTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGGTTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCc     >  1:3070429/1‑90
                                                                                           TTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCT     <  1:816800/91‑1
                                                                                           TTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCT     <  1:1026114/91‑1
                                                                                           TTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCT     <  1:713548/91‑1
                                                                                           TTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCT     <  1:3135238/91‑1
                                                                                           TTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCT     <  1:1719622/91‑1
                                                                                           TTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCT     >  1:1342080/1‑91
                                                                                           TTCGATTTTCGAACTTCTGGACGTCCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTGCTGGACGTTCGATTTTCGAACTTCCTTCT     >  1:3332343/1‑91
                                                                                            TCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGACCTTCTGGACGTTCGATTTTCGAACTTCCTTCTC    >  1:3675504/1‑91
                                                                                            TCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTC    <  1:3427663/91‑1
                                                                                            TCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTC    >  1:2410522/1‑91
                                                                                            TCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTC    <  1:723039/91‑1
                                                                                             CGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCG   >  1:2900742/1‑91
                                                                                             CGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCG   >  1:2159195/1‑91
                                                                                             CGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCG   >  1:761467/1‑91
                                                                                             CGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCG   >  1:1841913/1‑91
                                                                                             CGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCG   >  1:1489382/1‑91
                                                                                              GATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCGC  >  1:1112826/1‑91
                                                                                              GATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCGC  >  1:915764/1‑91
                                                                                                                                                                                         
CTATATTTAATGAAACCTATTGTCACAGAACGTGATATTTACAAAATAGAAAAAGAAGAAAACGATGTTGAACCTTACGGCGAGAAGGAAGTTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000731/553‑648
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgaTTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCTGGACGTTCGATTTTCGAACTTCCTTCTCGC  <  CP000731/720‑632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.