New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 25306 =167 (0.480)29 (0.100) 11/138 NT 17.5% intergenic (+204/‑42) USA300HOU_pUSA300HOUMR0030/USA300HOU_pUSA300HOUMR0031 Sin recombinase/hypothetical protein
?CP000731 25340 = 130 (0.430)intergenic (+238/‑8) USA300HOU_pUSA300HOUMR0030/USA300HOU_pUSA300HOUMR0031 Sin recombinase/hypothetical protein

Only 100 of 136 total aligned reads displayed.

GTTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/25406‑25306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatttatgagGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAAA  >  CP000731/25340‑25429
                                                                                                                                                                                                
GTTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGA                                                                                                      >  1:836699/1‑91
GTTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGA                                                                                                      <  1:2571322/91‑1
GTTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGA                                                                                                      <  1:481303/91‑1
GTTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGA                                                                                                      <  1:2946451/91‑1
 TTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGAC                                                                                                     >  1:170570/1‑91
 TTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGAC                                                                                                     >  1:3029657/1‑91
 TTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGAC                                                                                                     >  1:425453/1‑91
 TTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGAC                                                                                                     >  1:2490348/1‑91
    TAGCCGTGCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTGTTTGACATT                                                                                                  <  1:2081661/91‑1
     AGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTT                                                                                                 <  1:663367/91‑1
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATACCACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:3400676/1‑91
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:956157/1‑91
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                <  1:1965634/91‑1
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:822147/1‑91
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:798898/1‑91
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:1308498/1‑91
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:2584575/1‑91
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:1080821/1‑91
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:2785074/1‑91
      GCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTA                                                                                                >  1:2659615/1‑91
       CCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTAT                                                                                               <  1:2496014/91‑1
        CGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATG                                                                                              >  1:3026889/1‑91
        CGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATG                                                                                              >  1:2403845/1‑91
        CGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATG                                                                                              >  1:1770067/1‑91
        CGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATG                                                                                              >  1:428609/1‑91
         GTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGA                                                                                             >  1:1624624/1‑91
         GTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGA                                                                                             >  1:2470634/1‑91
         GTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGA                                                                                             >  1:2882626/1‑91
         GTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGA                                                                                             >  1:718548/1‑91
          TCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAG                                                                                            >  1:1396576/1‑91
          TCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAG                                                                                            >  1:2465441/1‑91
          TCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAG                                                                                            >  1:1396661/1‑91
          TCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAG                                                                                            <  1:2232356/91‑1
          TCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAG                                                                                            >  1:1041221/1‑91
              TAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTCAAATACTTTTTACATTTATGAGGTGT                                                                                        <  1:3930979/91‑1
              TAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTCAAATACTTTTTACATTTATGAGGTGT                                                                                        <  1:295605/91‑1
              TAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTCAAATACTTTTTACATTTATGAGGTGT                                                                                        <  1:3931314/91‑1
                            TTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAGGTGTTAGAATGAATTTAA                                                                          >  1:3757004/1‑91
                              AAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATT                                                                        >  1:1437137/1‑91
                              AAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAGGTGTTATAACGAATTTAATT                                                                        >  1:1620883/1‑91
                                    ATAATAAGAGGAATTAAATTCATTATAACACCTCATAAATGTCAAATACTTTTTACATTTATGAGGTGTTATAATGAATTTAATTCCTTTT                                                                  <  1:702788/91‑1
                                                                      ATAAATGTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGG                                >  1:3403457/1‑91
                                                                       TAAATGTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGC                               >  1:42064/1‑91
                                                                          ATGTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAT                            >  1:2966793/1‑91
                                                                          ATGTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAT                            >  1:2321730/1‑91
                                                                          ATGTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTAT                            >  1:1537403/1‑91
                                                                           TGTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATA                           >  1:607178/1‑91
                                                                            GTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAA                          >  1:3099301/1‑91
                                                                            GTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAA                          >  1:307434/1‑91
                                                                            GTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAA                          >  1:4133248/1‑91
                                                                            GTAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAA                          >  1:1580042/1‑91
                                                                             TAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAC                         >  1:2603136/1‑91
                                                                             TAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAC                         >  1:2516685/1‑91
                                                                             TAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAC                         >  1:2403236/1‑91
                                                                             TAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAC                         >  1:4106217/1‑91
                                                                             TAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAC                         >  1:2371996/1‑91
                                                                             TAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAC                         >  1:298001/1‑91
                                                                             TAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAAC                         >  1:3562126/1‑91
                                                                             TAAAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTGTTATTATTATTTTAATTATTTCTTGTTTATGGACGGCTATAAC                         >  1:108506/1‑91
                                                                                AAAAGTATTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTA                       >  1:2952275/1‑91
                                                                                       TTTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATA                <  1:3342175/91‑1
                                                                                        TTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATAT               >  1:1573428/1‑91
                                                                                        TTGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATAT               >  1:178392/1‑91
                                                                                         TGACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATT              >  1:1005664/1‑91
                                                                                           ACATTTATGAGGTGTTATAATGAATTTAATTCGTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATGACTAACAAATATTTA            <  1:3540980/91‑1
                                                                                           ACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTA            <  1:1569053/91‑1
                                                                                           ACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTA            >  1:120036/1‑91
                                                                                           ACATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTA            >  1:322423/1‑91
                                                                                            CATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTAC           <  1:898134/91‑1
                                                                                            CATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTAC           >  1:3877798/1‑91
                                                                                            CATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTAC           <  1:1163319/91‑1
                                                                                            CATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTAC           >  1:859462/1‑91
                                                                                             ATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACC          >  1:957816/1‑91
                                                                                             ATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACC          <  1:237873/91‑1
                                                                                             ATTTATGAGGTGTTATAATGAATTTAATTCCTTTTATCATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACC          >  1:3496896/1‑91
                                                                                              TTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCT         <  1:1545351/91‑1
                                                                                              TTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCT         >  1:577058/1‑91
                                                                                              TTTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCT         <  1:3710172/91‑1
                                                                                               TTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTT        <  1:1009988/91‑1
                                                                                               TTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTT        <  1:868797/91‑1
                                                                                               TTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTT        >  1:2140957/1‑91
                                                                                               TTATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTT        >  1:2140883/1‑91
                                                                                               TTATGAGCTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTT        <  1:2077095/91‑1
                                                                                                TATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTC       <  1:3802154/91‑1
                                                                                                TATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTC       <  1:1412250/91‑1
                                                                                                TATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTC       <  1:2645217/91‑1
                                                                                                 ATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCA      >  1:139707/1‑91
                                                                                                 ATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCA      <  1:3618269/91‑1
                                                                                                 ATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCA      >  1:2670403/1‑91
                                                                                                 ATGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCA      <  1:720733/91‑1
                                                                                                  TGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTTCCTTCAG     >  1:2081944/1‑91
                                                                                                  TGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAG     >  1:51068/1‑91
                                                                                                  TGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAG     <  1:1549841/91‑1
                                                                                                  TGAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAG     >  1:1939339/1‑91
                                                                                                   GAGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGA    <  1:4116012/91‑1
                                                                                                    AGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAA   >  1:1870315/1‑91
                                                                                                    AGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAA   >  1:3128617/1‑91
                                                                                                    AGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAA   <  1:411897/91‑1
                                                                                                    AGGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAA   >  1:1376692/1‑91
                                                                                                     GGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAAA  <  1:2352779/91‑1
                                                                                                                                                                                                
GTTATAGCCGTCCATAAACAAGAAAAAATTAAAATAATAATAAAAGGAATTAAATTCATTATAACACCTCATAAATGTAAAAAGTATTTGACATTTATGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000731/25406‑25306
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acatttatgagGTGTTATAATGAATTTAATTCCTTTTATTATTATTTTAATTTTTTCTTGTTTATGGACGGCTATAACTAACAAATATTTACCTTCAGAAA  >  CP000731/25340‑25429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.