| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | 1040 = | 1110 (0.110) | 199 (0.030) | 26/124 | NT | 16.6% | coding (155/192 nt) | USA300HOU_RS15665 | hypothetical protein |
| ? | NC_012417 | 1090 = | 1144 (0.150) | coding (105/192 nt) | USA300HOU_RS15665 | hypothetical protein | |||||
Only 100 of 3406 total aligned reads displayed.
TAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012417/1147‑1040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTT > NC_012417/1090‑1179 TAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTT > 1:4069679/1‑91TAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTT > 1:2281592/1‑91TAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTT < 1:727523/91‑1TAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTT < 1:2325250/91‑1 AAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGT < 1:55777/91‑1 AAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGT < 1:597317/91‑1 AAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGT > 1:3037748/1‑91 AAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGT < 1:269025/91‑1 AAGTGATATCATACAAAGCTGTACTGTCTTAGTTTTGTGACACAATATATTGCGTTTTTCTTATTTTTGTGACACTACATACAGCATTTGT < 1:3319260/91‑1 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC < 1:1383745/91‑1 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC > 1:1892783/1‑91 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC < 1:2576749/91‑1 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC < 1:2654714/91‑1 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC < 1:1296234/91‑1 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC > 1:2766119/1‑91 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC > 1:2958758/1‑91 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC > 1:3597747/1‑91 AGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTC > 1:3391024/1‑91 GTGGTATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATTCAGCATTTGTCA < 1:3205409/91‑1 GTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCA < 1:1053461/91‑1 GTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCA > 1:1132010/1‑91 TGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCAC > 1:3841654/1‑91 TGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCAC < 1:3552482/91‑1 GATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA > 1:1757684/1‑91 GATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA < 1:2389478/91‑1 GATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA > 1:316675/1‑91 GATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA < 1:1511360/91‑1 GATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA > 1:1627487/1‑91 GATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACA > 1:2242862/1‑91 ATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAA > 1:2184352/1‑91 TATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAA > 1:3810496/1‑91 TATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAA > 1:1428844/1‑91 TATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAA > 1:1001742/1‑91 TATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAA < 1:3273194/91‑1 ATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAA > 1:2210487/1‑91 ATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAA < 1:1999095/91‑1 ATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAA > 1:3000701/1‑91 TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAA < 1:3132094/91‑1 TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAA > 1:2452750/1‑91 TCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAA > 1:1330387/1‑91 ATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATA > 1:678045/1‑91 TACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAA > 1:1661168/1‑91 TACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAA < 1:3237418/91‑1 ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAG > 1:172004/1‑91 ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAG > 1:1927264/1‑91 ACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAG > 1:41069/1‑91 CAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGA > 1:2826162/1‑91 AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGAC < 1:1096783/91‑1 AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGAC < 1:3649053/91‑1 AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGAC < 1:2906644/91‑1 AAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGAC < 1:2933247/91‑1 GTGACACTACATACAGCATTTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCA > 1:449086/1‑91 TTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAC > 1:88583/1‑91 TGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACC > 1:3994869/1‑91 GTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCC < 1:250100/91‑1 GTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCC < 1:520933/91‑1 GTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCC > 1:368444/1‑91 TCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAACCCCC > 1:3458579/1‑91 TCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCC > 1:395005/1‑91 TCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCC < 1:4149570/91‑1 TCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCC > 1:1258849/1‑91 TCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCC > 1:768100/1‑91 TCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTACGATATCACTTTAAAATACCTTAAAAGCCC > 1:3350367/1‑91 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:4028668/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:807182/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:3725574/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT > 1:959481/1‑91 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:351893/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:2038426/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:1168864/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:14730/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:1685063/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:1819487/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:1852340/91‑1 CACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCT < 1:2802506/91‑1 ACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTG > 1:3072848/1‑91 ACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTG < 1:1198820/91‑1 CAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGG < 1:2722932/91‑1 CAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGG < 1:2617209/91‑1 CAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGG > 1:235606/1‑91 CAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGG < 1:3103695/91‑1 CAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGG < 1:1548612/91‑1 AAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGA > 1:3914677/1‑91 AAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGA > 1:3485663/1‑91 AAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAA > 1:2086786/1‑91 AAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAA > 1:1792186/1‑91 AAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAA > 1:2430824/1‑91 AATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATT < 1:1967326/91‑1 AATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATT > 1:480920/1‑91 AATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATT < 1:1593199/91‑1 CAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCT < 1:3418276/91‑1 CAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCT > 1:917079/1‑91 CAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCT < 1:2863868/91‑1 CAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCT > 1:2118075/1‑91 CAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCT < 1:3884539/91‑1 CAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCT < 1:2539575/91‑1 AAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTT > 1:646521/1‑91 AAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTT < 1:1229139/91‑1 AAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTT > 1:85853/1‑91 AAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTT > 1:3765964/1‑91 TAAAGTGATATCATACAAAGCTGTACTGTCTTATTTTTGTGACACAATATATTGCGTTTGTCTTATTTTTGTGACACTACATACAGCATTTGTCACAAAAATAAGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_012417/1147‑1040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtcacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTT > NC_012417/1090‑1179 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |