BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	1040 =	1110 (0.110)	199 (0.030)	26/124	NT	16.6%	coding (155/192 nt)	USA300HOU_RS15665	hypothetical protein
*	?	NC_012417	1090 =	1144 (0.150)	199 (0.030)	26/124	NT	16.6%	coding (105/192 nt)	USA300HOU_RS15665	hypothetical protein

Only 100 of 10603 total aligned reads displayed.

TGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTT  >  NC_012417/1000‑1180

 gACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaaa                                                                                           >  1:1486455/1‑91 (MQ=255)

 cactaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACaaa                                                                                           >  1:1223101‑M2/13‑91 (MQ=255)

   ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg                                                                                         <  1:1813858‑M2/81‑1 (MQ=255)

   ctaatgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACg                                                                                         >  1:3008508‑M2/11‑91 (MQ=255)

      atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                                                                      >  1:3044297‑M2/8‑91 (MQ=255)

      atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                                                                      >  1:2336215‑M2/8‑91 (MQ=255)

      atgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCaa                                                                                      <  1:2418591‑M2/84‑1 (MQ=255)

       tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat                                                                                     <  1:2729032‑M2/85‑1 (MQ=255)

       tgtcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat                                                                                     <  1:659958‑M2/85‑1 (MQ=255)

       ggtattttaaagtgatatcatacaaagctGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAat                                                                                     >  1:2376582‑M1/30‑91 (MQ=255)

         tcttTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAatat                                                                                   <  1:924425‑M2/87‑1 (MQ=255)

             ttttGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATtg                                                                               <  1:505403/91‑1 (MQ=255)

               ttgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtg                                                                             <  1:2766705‑M2/91‑3 (MQ=255)

                tgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgt                                                                            >  1:2234413‑M2/1‑88 (MQ=255)

                tgttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgt                                                                            <  1:3378573‑M2/91‑4 (MQ=255)

                  ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                                          >  1:2939597‑M2/1‑86 (MQ=255)

                  ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                                          <  1:2034894‑M2/91‑6 (MQ=255)

                  ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                                          <  1:1080111‑M2/91‑6 (MQ=255)

                  ttgATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtca                                                                          >  1:3948602‑M2/1‑86 (MQ=255)

                    gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                                        <  1:1258112‑M2/91‑8 (MQ=255)

                    gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                                        >  1:1000‑M2/1‑84 (MQ=255)

                    gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                                        <  1:3302644‑M2/91‑8 (MQ=255)

                    gATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTACGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcaca                                                                        <  1:4138031‑M2/91‑8 (MQ=255)

                          ttATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaata                                                                  <  1:3644499‑M2/91‑14 (MQ=255)

                           tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                                                 <  1:1775930‑M2/91‑15 (MQ=255)

                           tataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataa                                                                 <  1:1332628‑M2/91‑15 (MQ=255)

                            ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataag                                                                <  1:536629‑M2/91‑16 (MQ=255)

                            ataAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACACAATATATTGtgtcacaaaaataag                                                                <  1:3868787‑M2/91‑16 (MQ=255)

                             taAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataaga                                                               <  1:619423‑M2/91‑17 (MQ=255)

                              aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac                                                              <  1:3524174‑M2/91‑18 (MQ=255)

                              aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagac                                                              <  1:2970055‑M2/91‑18 (MQ=255)

                              aaaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAACATATTGtgtcacaaaaataagac                                                              <  1:312138‑M2/91‑18 (MQ=255)

                               aaaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagaca                                                             <  1:1520715‑M2/91‑19 (MQ=255)

                                aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag                                                            >  1:2156561‑M2/1‑72 (MQ=255)

                                aaaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacag                                                            >  1:764302‑M2/1‑72 (MQ=255)

                                 aaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagt                                                           >  1:4068580‑M2/1‑71 (MQ=255)

                                 aaaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagt                                                           <  1:3079098‑M2/91‑21 (MQ=255)

                                  aaGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagta                                                          >  1:3825587‑M2/1‑70 (MQ=255)

                                   aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac                                                         >  1:806816‑M2/1‑69 (MQ=255)

                                   aGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtac                                                         >  1:1843921‑M2/1‑69 (MQ=255)

                                    GTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACa                                                        >  1:2615151‑M1/1‑91 (MQ=255)

                                      ACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGc                                                      >  1:1998336‑M1/1‑91 (MQ=255)

                                        TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCtt                                                    >  1:2833399‑M1/1‑91 (MQ=255)

                                             TATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTAt                                               <  1:2688349‑M1/91‑1 (MQ=255)

                                                TTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGat                                            <  1:3721994‑M1/91‑1 (MQ=255)

                                                 TTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGata                                           <  1:1962225‑M1/91‑1 (MQ=255)

                                                  TTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGatat                                          >  1:1558724‑M1/1‑91 (MQ=255)

                                                  TTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGatat                                          <  1:345125‑M1/91‑1 (MQ=255)

                                                   TGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATc                                         <  1:2457504‑M1/91‑1 (MQ=255)

                                                    GTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCa                                        >  1:166483‑M1/1‑91 (MQ=255)

                                                     tgACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGtgtcacaaaaataagacagtacttttttataaaaaatcaa                                       <  1:472569‑M2/91‑41 (MQ=255)

                                                     TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                                       <  1:378585‑M1/91‑1 (MQ=255)

                                                     TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCAc                                       <  1:1884148‑M1/91‑1 (MQ=255)

                                                     TGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATAGCAc                                       <  1:3337976‑M1/91‑1 (MQ=255)

                                                      GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                                      <  1:326553‑M1/91‑1 (MQ=255)

                                                      GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                                      >  1:2497975‑M1/1‑91 (MQ=255)

                                                      GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                                      >  1:2869548‑M1/1‑91 (MQ=255)

                                                      GACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACt                                      <  1:1370788‑M1/91‑1 (MQ=255)

                                                       ACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACtt                                     <  1:436258‑M1/91‑1 (MQ=255)

                                                         AAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTa                                   >  1:886746‑M1/1‑91 (MQ=255)

                                                         AAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTa                                   <  1:2906143‑M1/91‑1 (MQ=255)

                                                           aTGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTaaa                                 >  1:3755724/1‑91 (MQ=255)

                                                             gCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTCTAAAAt                               <  1:3230517/91‑1 (MQ=255)

                                                               tgtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAc                             >  1:1150824/1‑91 (MQ=255)

                                                                gtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc                            >  1:734243/1‑91 (MQ=255)

                                                                gtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc                            <  1:2112961/91‑1 (MQ=255)

                                                                gtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc                            <  1:3485637/91‑1 (MQ=255)

                                                                gtatgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATAcc                            >  1:356215/1‑91 (MQ=255)

                                                                  atgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTGTGATATCACTTTAAAATACCtt                          >  1:144550/1‑91 (MQ=255)

                                                                   tgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTa                         <  1:691560/91‑1 (MQ=255)

                                                                   tgtaGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTa                         >  1:2539050/1‑91 (MQ=255)

                                                                    gtaGTGTGACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTaa                        <  1:2071363/91‑1 (MQ=255)

                                                                       gtgtCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAc                     >  1:1695286/1‑91 (MQ=255)

                                                                          tcacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAAcccc                  <  1:1187960‑M2/75‑1 (MQ=255)

                                                                           cacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCt                 <  1:4028525‑M2/76‑1 (MQ=255)

                                                                           cacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCt                 >  1:850703‑M2/16‑91 (MQ=255)

                                                                           cacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCt                 <  1:1596100‑M2/76‑1 (MQ=255)

                                                                           cacaaaaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCt                 <  1:1633200‑M2/76‑1 (MQ=255)

                                                                                aaataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAAt            >  1:3682006‑M2/11‑91 (MQ=255)

                                                                                 aataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAAtt           <  1:4103838‑M2/82‑1 (MQ=255)

                                                                                 aataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAAtt           <  1:1037913‑M2/82‑1 (MQ=255)

                                                                                 aataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAAtt           >  1:1405007‑M2/10‑91 (MQ=255)

                                                                                 aataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAAtt           >  1:3160393‑M2/10‑91 (MQ=255)

                                                                                 aataagacaAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGAAATCACTTTAAAATACCTTAAAACCCCTGGAAtt           >  1:2803471‑M2/10‑91 (MQ=255)

                                                                                   tAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTC         <  1:173573‑M1/91‑1 (MQ=255)

                                                                                   tAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTC         <  1:1919963‑M1/91‑1 (MQ=255)

                                                                                   tAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTC         <  1:576716‑M1/91‑1 (MQ=255)

                                                                                   tAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTC         <  1:2267127‑M1/91‑1 (MQ=255)

                                                                                     aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG       >  1:2577801‑M1/1‑91 (MQ=255)

                                                                                     aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG       >  1:961314‑M1/1‑91 (MQ=255)

                                                                                     aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG       <  1:2200341‑M1/91‑1 (MQ=255)

                                                                                     aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG       >  1:2647569‑M1/1‑91 (MQ=255)

                                                                                     aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG       >  1:3193646‑M1/1‑91 (MQ=255)

                                                                                     aGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTG       >  1:3906279‑M1/1‑91 (MQ=255)

                                                                                      gACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGG      >  1:2298244‑M1/1‑91 (MQ=255)

                                                                                      gACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGG      >  1:3989634‑M1/1‑91 (MQ=255)

                                                                                      gACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGG      >  1:3413372‑M1/1‑91 (MQ=255)

                                                                                       aCAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGC     <  1:1297461‑M1/91‑1 (MQ=255)

                                                                                         aaaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCaa   <  1:1118587‑M1/91‑3 (MQ=255)

                                                                                         aaaCGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGACATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCaa   <  1:3600265‑M1/91‑3 (MQ=255)

TGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAAACGCAATATATTGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTT  >  NC_012417/1000‑1180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.