BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	5802 (0.580)	1563 (0.170)	53/150	NT	21.9%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
*	?	NC_012417	= 2949	5721 (0.610)	1563 (0.170)	53/150	NT	21.9%	intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–

Only 100 of 2681 total aligned reads displayed.

TTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2843‑2937

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaacTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAA  <  NC_012417/2949‑2859

TTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                 <  1:2665509/91‑1

TTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTG                                                                                                 >  1:834046/1‑91

 TTTCGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  1:3214754/91‑1

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  1:2536917/91‑1

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                >  1:1834354/1‑91

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  1:2856738/91‑1

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  1:2740148/91‑1

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                >  1:2343075/1‑91

 TTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGA                                                                                                <  1:2380108/91‑1

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                               >  1:422653/1‑91

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                               <  1:1933157/91‑1

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAA                                                                                               <  1:1558108/91‑1

  TTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTAGAA                                                                                               >  1:3348733/1‑91

   TAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAA                                                                                              >  1:3610414/1‑91

   TAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAA                                                                                              <  1:662419/91‑1

    AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                             <  1:2214876/91‑1

    AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                             <  1:3736102/91‑1

    AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                             >  1:1626130/1‑91

          TTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTC                                                                                       <  1:1307402/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:3430034/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:3494921/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:109490/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:299599/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:3651257/91‑1

           TTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGCTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCA                                                                                      <  1:2466589/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  1:3142598/91‑1

            TTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCAC                                                                                     <  1:1179137/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGGAACTCGTTCACA                                                                                    <  1:3183705/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:446118/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:3259741/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:3839819/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:232317/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:475372/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:1275622/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:2140840/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:3057205/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:1868445/91‑1

             TATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACA                                                                                    <  1:1585058/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:3915831/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:2890793/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:2632244/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:3779432/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:2493491/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:872850/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:1227513/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:1377647/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:1505869/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:1669105/91‑1

              ATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACAC                                                                                   <  1:509440/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:404892/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:2412401/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:2253045/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:79249/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:3944473/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:1434442/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:3990684/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:689492/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:2063609/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:543747/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:3032271/91‑1

               TTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACT                                                                                  <  1:296740/91‑1

                TTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTC                                                                                 <  1:1742728/91‑1

                TTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTC                                                                                 <  1:2174195/91‑1

                TTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTC                                                                                 <  1:2099771/91‑1

                 TATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCG                                                                                <  1:280439/91‑1

                 TATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCG                                                                                <  1:2576395/91‑1

                 TATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCG                                                                                <  1:1048418/91‑1

                 TATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCG                                                                                <  1:3103122/91‑1

                 TATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTAGAAACTCGTTCACACTCG                                                                                <  1:576785/91‑1

                 TATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCAGAAAAAGAATAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCG                                                                                <  1:3303950/91‑1

                  ATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGT                                                                               <  1:1789530/91‑1

                  ATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGT                                                                               <  1:4025019/91‑1

                      ATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTCA                                                                           <  1:2932009/91‑1

                                ACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTCAAAAAACAACC                                                                 <  1:4126575/91‑1

                                          ATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCT                                                       <  1:1344615/91‑1

                                          ATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCT                                                       <  1:612179/91‑1

                                                                                 TTGTTTTTTGAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGA                <  1:1000073/91‑1

                                                                                    TTTTTTGAAACTCGTTCACACTCGTTTCAAAAAACATCCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAA             <  1:169933/91‑1

                                                                                          GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATG       >  1:3565407/1‑91

                                                                                          GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATG       >  1:345774/1‑91

                                                                                          GAAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATG       >  1:3382455/1‑91

                                                                                           AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGA      <  1:7567/91‑1

                                                                                           AAACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGA      >  1:2606480/1‑91

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     >  1:3696557/1‑91

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  1:1140701/91‑1

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  1:717992/91‑1

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  1:202105/91‑1

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     >  1:2285652/1‑91

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     <  1:269807/91‑1

                                                                                            AACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAA     >  1:3886086/1‑91

                                                                                             ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAGACCTAAATAAATTAATGTGAAAACCAATGAAT    >  1:3529929/1‑91

                                                                                             ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAAT    >  1:3808075/1‑91

                                                                                             ACTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAAT    >  1:942117/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  1:1966406/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  1:1899320/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  1:1469615/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   <  1:4073257/91‑1

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  1:1401754/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  1:913176/1‑91

                                                                                              CTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATA   >  1:971152/1‑91

TTTTAGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_012417/2843‑2937

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaacTCGTTCACACTCGTTTCAAAAAACAACCTATTCCTTCTTCTTTTTATGACCCTCTAAACCTAAATAAATTAATGTGAAAACCAATGAATAA  <  NC_012417/2949‑2859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.