BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_012417	= 2937	5802 (0.580)	1563 (0.170)	53/150	NT	21.9%	intergenic (‑263/–)	USA300HOU_RS14900/–	hypothetical protein/–
*	?	NC_012417	= 2949	5721 (0.610)	1563 (0.170)	53/150	NT	21.9%	intergenic (‑275/–)	USA300HOU_RS14900/–	hypothetical protein/–

Only 100 of 13235 total aligned reads displayed.

AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTT  >  NC_012417/2847‑3027

aGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAAC                                                                                            >  1:186815‑M1/1‑91 (MQ=255)

 gAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACg                                                                                           >  1:2162382/1‑91 (MQ=255)

   aaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                         <  1:1562071/91‑1 (MQ=255)

   aaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                         <  1:787017/91‑1 (MQ=255)

   aaGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAg                                                                                         <  1:2420577/91‑1 (MQ=255)

      ttttATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAgtgt                                                                                      >  1:3818369/1‑91 (MQ=255)

       tttatttaTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGtgtg                                                                                     >  1:1122153/1‑91 (MQ=255)

       tttatttaTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGtgtg                                                                                     <  1:2382750/91‑1 (MQ=255)

       tttatttaTTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGtgtg                                                                                     >  1:520719/1‑91 (MQ=255)

         tatttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcaca                                                                                   <  1:561905‑M1/91‑10 (MQ=255)

          atttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAAc                                                                                  >  1:2797068/1‑91 (MQ=255)

           tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacact                                                                                 <  1:1639455‑M1/91‑12 (MQ=255)

           tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                 <  1:3192230/91‑1 (MQ=255)

           tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                 >  1:249061/1‑91 (MQ=255)

           tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                 >  1:1227645/1‑91 (MQ=255)

           tttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACg                                                                                 >  1:2714310/1‑91 (MQ=255)

            ttattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacactc                                                                                <  1:1160794‑M1/91‑13 (MQ=255)

             tattCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacactcg                                                                               <  1:2607864‑M1/91‑14 (MQ=255)

              attCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacactcgt                                                                              <  1:4049409‑M1/91‑15 (MQ=255)

               ttCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAgtt                                                                             <  1:93713‑M2/91‑4 (MQ=255)

                tCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGATCGAgttt                                                                            <  1:421628‑M2/91‑5 (MQ=255)

                 cATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacactcgtttc                                                                           <  1:1903081‑M1/91‑18 (MQ=255)

                  aTTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTttct                                                                          >  1:3394323/1‑91 (MQ=255)

                    tGGTTTTCACATTAACTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTAGTTTTTTGAAACGAGTGTGAACGAGTttcttc                                                                        >  1:3534780/1‑91 (MQ=255)

                     ggTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTtcttct                                                                       <  1:304909/91‑1 (MQ=255)

                      gTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                      <  1:167447/91‑1 (MQ=255)

                      gTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTcttctt                                                                      <  1:2460921/91‑1 (MQ=255)

                        tttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                    >  1:2987710/1‑91 (MQ=255)

                        tttCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgt                                                                    >  1:3275509/1‑91 (MQ=255)

                          tCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtct                                                                  <  1:2346087/91‑1 (MQ=255)

                           cacaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtctt                                                                 >  1:2051351/1‑91 (MQ=255)

                            acaTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTtcttgtcttg                                                                <  1:1422794/91‑1 (MQ=255)

                              aTTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGAt                                                              <  1:862602/91‑1 (MQ=255)

                               ttAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATa                                                             >  1:3937920/1‑91 (MQ=255)

                                tAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATAc                                                            >  1:350456/1‑91 (MQ=255)

                                tAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATAc                                                            <  1:1760058/91‑1 (MQ=255)

                                 aaTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACT                                                           <  1:1197958‑M1/91‑1 (MQ=255)

                                 aaTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACT                                                           <  1:3901648‑M1/91‑1 (MQ=255)

                                 aaTTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACT                                                           >  1:1345187‑M1/1‑91 (MQ=255)

                                      atttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATA                                                      <  1:1980190‑M1/91‑1 (MQ=255)

                                       tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                     >  1:2675571/1‑91 (MQ=255)

                                       tttaGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAg                                                     >  1:969440/1‑91 (MQ=255)

                                         taGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGaa                                                   >  1:744575/1‑91 (MQ=255)

                                           ggTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACtcgttcacactcgtttcaaaaaacaacctattccttcttcttt                                                 <  1:3018746‑M1/91‑44 (MQ=255)

                                           ggTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAAt                                                 >  1:4119654/1‑91 (MQ=255)

                                               tAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                             <  1:3575453/91‑1 (MQ=255)

                                               tAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                             <  1:596550/91‑1 (MQ=255)

                                               tAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACt                                             >  1:3784269/1‑91 (MQ=255)

                                                agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                            <  1:708311/91‑1 (MQ=255)

                                                agagGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTc                                            <  1:48957/91‑1 (MQ=255)

                                                    ggTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtt                                        >  1:2753433/1‑91 (MQ=255)

                                                      tCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                      >  1:1838271/1‑91 (MQ=255)

                                                      tCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                      >  1:3122339/1‑91 (MQ=255)

                                                      tCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGAtttt                                      >  1:2093321/1‑91 (MQ=255)

                                                       cATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                     <  1:666154/91‑1 (MQ=255)

                                                       cATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                     <  1:823826/91‑1 (MQ=255)

                                                       cATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                     <  1:153135/91‑1 (MQ=255)

                                                       cATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTta                                     <  1:2309930/91‑1 (MQ=255)

                                                         tAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAta                                   >  1:4083574‑M2/1‑89 (MQ=255)

                                                          aaaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAtat                                  <  1:2275605‑M2/91‑4 (MQ=255)

                                                          aaaaaGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAtat                                  <  1:3435234‑M2/91‑4 (MQ=255)

                                                             aagaagaagGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTAtatata                               >  1:3702360‑M2/1‑85 (MQ=255)

                                                               GAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatatata                             >  1:2942036‑M1/1‑91 (MQ=255)

                                                               GAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTtatatatata                             >  1:2016193‑M1/1‑91 (MQ=255)

                                                                 AGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGc                           >  1:3625950‑M1/1‑91 (MQ=255)

                                                                 AGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGc                           <  1:1453047‑M1/91‑1 (MQ=255)

                                                                  GAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                          <  1:2870105‑M1/91‑1 (MQ=255)

                                                                  GAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCt                          <  1:2641685‑M1/91‑1 (MQ=255)

                                                                   AAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTg                         <  1:3744479‑M1/91‑1 (MQ=255)

                                                                    AGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGt                        >  1:2908945‑M1/1‑91 (MQ=255)

                                                                     ggAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTA                       >  1:3664875‑M1/1‑91 (MQ=255)

                                                                      gAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAA                      <  1:2529631‑M1/91‑1 (MQ=255)

                                                                       aaTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                     <  1:3319905/91‑1 (MQ=255)

                                                                       aaTAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAAc                     >  1:3084956/1‑91 (MQ=255)

                                                                         tAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                   >  1:2201812/1‑91 (MQ=255)

                                                                         tAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTg                   <  1:1937626/91‑1 (MQ=255)

                                                                           ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGtt                 <  1:2130434/91‑1 (MQ=255)

                                                                           ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGtt                 >  1:2831776/1‑91 (MQ=255)

                                                                           ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGtt                 <  1:1385292/91‑1 (MQ=255)

                                                                           ggTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGtt                 <  1:2569747/91‑1 (MQ=255)

                                                                            gttgttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTg                >  1:386616/1‑91 (MQ=255)

                                                                             ttgttTTTTGAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtga               <  1:1000073‑M1/91‑78 (MQ=255)

                                                                               gttTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGata             >  1:1266847/1‑91 (MQ=255)

                                                                                ttttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAt            >  1:1598660‑M2/1‑90 (MQ=255)

                                                                                  ttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAtta          >  1:315698‑M2/1‑88 (MQ=255)

                                                                                  ttttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAtta          <  1:895948‑M2/91‑4 (MQ=255)

                                                                                   tttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAttac         >  1:1044475‑M2/1‑87 (MQ=255)

                                                                                    ttGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAttaca        >  1:455259‑M2/1‑86 (MQ=255)

                                                                                     tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAttacag       <  1:1493824‑M2/91‑7 (MQ=255)

                                                                                     tGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATAttacag       <  1:3470359‑M2/91‑7 (MQ=255)

                                                                                      gAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatg      >  1:3357712‑M1/1‑5 (MQ=255)

                                                                                      gAAACtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatg      >  1:1084891‑M1/1‑5 (MQ=255)

                                                                                       aaaCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAgtg     >  1:1714771/1‑91 (MQ=255)

                                                                                        aaCtcgttcacactcgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaa    <  1:1802171‑M1/91‑89 (MQ=255)

                                                                                         aCGAGTGTGAACGAgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaat   <  1:2238076‑M2/91‑78 (MQ=255)

                                                                                         aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt   >  1:3977743/1‑91 (MQ=255)

                                                                                         aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt   >  1:1304415/1‑91 (MQ=255)

                                                                                         aCGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGtt   >  1:3237888/1‑91 (MQ=255)

                                                                                          cGAGTGTGAACGAgtttcaaaaaacaacctattccttcttctttttatgaccctctaaacctaaataaattaatgtgaaaaccaatgaata  <  1:4014848‑M2/91‑79 (MQ=255)

                                                                                          cGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGttt  >  1:632079/1‑91 (MQ=255)

AGAAAGTTTTATTTATTCATTGGTTTTCACATTAATTTATTTAGGTTTAGAGGGTCATAAAAAGAAGAAGGAATAGGTTGTTTTTTGAAACGAGTGTGAACGAGTTTCTTCTTGTCTTGATACTATATAGAAATAACTCGATTTTATATATATAGCTGTAACTGTTGATATTACAGTGTTT  >  NC_012417/2847‑3027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.