| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2161 | 76 (0.770) | 19 (0.200) | 12/152 | NT | 19.5% | intergenic (+256/‑22) | dnaA/dnaN | Chromosomal replication initiator protein DnaA/DNA polymerase III subunit beta |
| ? | USA300TCH1516_ALE | = 2172 | 85 (0.910) | intergenic (+267/‑11) | dnaA/dnaN | Chromosomal replication initiator protein DnaA/DNA polymerase III subunit beta | |||||
TCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2070‑2161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAA < USA300TCH1516_ALE/2172‑2084 TCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAA < 1:1194110/91‑1 AATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTT < 1:1798211/91‑1 AATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTT < 1:1795739/91‑1 TCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCC < 1:1568252/91‑1 TATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAG < 1:754747/91‑1 ATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGT < 1:1084033/91‑1 TGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTC < 1:2270297/91‑1 TGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTC < 1:50441/91‑1 TGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTC < 1:3162648/91‑1 TGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACGTAAAACCTATATAATTATATATAAACTCCTTCCAGTC < 1:3497261/91‑1 TGTTTTTAAGACTTATCCACCAATCCACAGAACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTC < 1:2370008/91‑1 GTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCG < 1:208658/91‑1 GTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCG < 1:2918030/91‑1 TTTTTAAGACTCATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGT < 1:3763767/91‑1 TTTGTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAATCGT < 1:3272563/91‑1 TTTATAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGT < 1:3272537/91‑1 TTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGTT < 1:661829/91‑1 TTTAAGACTTATCCACCAATCCACAGCACCTCCTACTATTACTAGGAACTTAAGACCCATATAATTATATATAAACTCCTTCCAGTCGTTT < 1:3312764/91‑1 CTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGTTTATATATA < 1:2721389/91‑1 TTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGTTTATATATAA < 1:3680846/91‑1 CCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAACTCCTTCCAGTCGTTTATATATAATTATATA < 1:1414805/91‑1 ACTTAAAACCTATATAATTATATATAAACGACTGGAAGGAGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGC > 1:2857320/1‑91 ACTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAA < 1:2405709/91‑1 TCGCCAAATCTATGTTTTTAAGACTTATCCACCAATCCACAGCACCTACTACTATTACTAAGAACTTAAAACCTATATAATTATATATAAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2070‑2161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacTCCTTCCAGTCGTTTATATATAATTATATAGGTTTTAAGTTCTTAGTAATAGTAGTAGGTGCTGTGGATTGGTGGATAAGTCTTAAAAA < USA300TCH1516_ALE/2172‑2084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |