| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 12708 = | 103 (1.050) | 20 (0.220) | 17/146 | NT | 18.1% | intergenic (+274/‑105) | hutH/serS_1 | Histidine ammonia‑lyase/Serine‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | 12737 = | 87 (0.970) | intergenic (+303/‑76) | hutH/serS_1 | Histidine ammonia‑lyase/Serine‑‑tRNA ligase | |||||
CTTTCCCAAATAATTATCATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACATCCCTACAAGGGACGTGGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/12801‑12708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtctTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGACATTAG > USA300TCH1516_ALE/12737‑12826 CTTTCCCAAATAATTATCATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACATCCCTACAAGGGACGTGG < 1:2865336/91‑1CTTTCCCAAATAATTATCATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACATCCCTACAAGGGACGTGG > 1:1832799/1‑91 TTCCCAAATAATTATCATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACATCCCTACAAGGGACGTGGTC > 1:1382850/1‑91 CCAAATAATTATCATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACGTCCCTTGTAGGGATGTGGTCTTT < 1:767867/91‑1 CAAATAATTATCATTTGTTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACGTCCCTTGTAGGGATGTGGTCTTTT < 1:4052259/91‑1 AAATAATTATCATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACGTCCCTTGTAGGGATGTGGTCTTTTT < 1:2638941/91‑1 AATAATTATCATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACGTCCCTTGTAGGGATGTGGTCTTTTTT < 1:2235323/91‑1 CATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACGTCCCTTGTAGGGATGTGGTCTTTTTTTATTTTCTA < 1:3797437/91‑1 TACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACGTCCCTTGTAGGGATGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTC < 1:291738/91‑1 ACCACATCCCTACAGGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAA > 1:968149/1‑91 CCACATCCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAG > 1:1145343/1‑91 CCACATCCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAG > 1:3940509/1‑91 CACATCCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGG > 1:1103327/1‑91 CACATCCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGG > 1:3460399/1‑91 CATCCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGAT > 1:4121946/1‑91 ATCCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATG > 1:1695229/1‑91 TCCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGA > 1:521517/1‑91 TCCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGA < 1:1628434/91‑1 CCCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAA > 1:1067128/1‑91 CCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAG > 1:3835222/1‑91 CCTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAG > 1:3093120/1‑91 CTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGG > 1:331343/1‑91 CTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGG > 1:2150762/1‑91 CTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGG > 1:2780235/1‑91 CTACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGG > 1:2445873/1‑91 TACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGT > 1:3268705/1‑91 TACAAGGGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGT > 1:1363196/1‑91 GGACGTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGT > 1:1541662/1‑91 GTGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGA > 1:4083679/1‑91 TGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGAC > 1:1400186/1‑91 TGGTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGAC > 1:1399211/1‑91 TGGTCTTTTTTTATTTTCTAAAAAAGAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGAC < 1:3853803/91‑1 GTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGACAT < 1:1587886/91‑1 GTCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGACAT < 1:2837715/91‑1 TCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGACATT < 1:2997094/91‑1 TCTTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGACATT < 1:627669/91‑1 TTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGACATTAG > 1:1574166/1‑91 TTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGACATTAG < 1:2410005/91‑1 CTTTCCCAAATAATTATCATTTATTATGGAATGACGTACGTCTTTATTTTTTAGAAAATAAAAAAAGACCACATCCCTACAAGGGACGTGGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/12801‑12708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtctTTTTTTATTTTCTAAAAAATAAAGACGTACGTCATTCCATAATAAATGATAATTATTTGGGAAAGGATGAAGGTTAATGTTAGACATTAG > USA300TCH1516_ALE/12737‑12826 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |