| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 22769 | 94 (0.960) | 6 (0.060) | 5/152 | NT | 6.6% | coding (305/1284 nt) | purA | Adenylosuccinate synthetase |
| ? | USA300TCH1516_ALE | = 22794 | 81 (0.870) | coding (330/1284 nt) | purA | Adenylosuccinate synthetase | |||||
GAGTCGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/22676‑22769‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgc‑TAAGTGATATGGTAAAATCACTTGCGCACGATTAGATATACGTAAATTACTTGTAGGAATGCCACGTTCATTTAATCCGTCTAATTCTTT < USA300TCH1516_ALE/22794‑22705 GAGTCGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCG < 1:1612251/91‑1 GTCGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTG > 1:2449579/1‑91 TCGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC > 1:2534473/1‑91 CTATTGAAAGAATTAGACGGATTAAATGNACGTNGCATTCCTACANGTAATTTACGTATANCTAATCGTGCGCAAGTGATATGGTAAAATC < 1:1324777/91‑1 TATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC‑TAAGTGATATGGTAAAATCAC < 1:1471708/91‑1 TATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC‑TAAGTGATATGGTAAAATCAC < 1:1848544/91‑1 TTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC‑TAAGTGATATGGTAAAATCACTT < 1:1394187/91‑1 TGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC‑TAAGTGATATGGTAAAATCACTTG < 1:894810/91‑1 AGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC‑TAAGTGATATGGTAAAATCACTTGCGCA < 1:3122013/91‑1 GTGC‑TAAGTGATATGGTAAAATCACTTGCGCACGATTAGATATACGTAAATTACTTGTAGGAATGCCACGTTCATTTAATCCGTCTAATTC > 1:285418/1‑91 GTGC‑TAAGTGATATGGTAAAATCACTTGCGCACGATTAGATATACGTAAATTACTTGTAGGAATGCCACGTTCATTTAATCCGTCTAATTC > 1:3710008/1‑91 GTGC‑TAAGTGATATGGTAAAATCACTTGCGCACGATTAGATATACGTAAATTACTTGTAGGAATGCCACGTTCATTTAATCCGTCTAATTC > 1:3710469/1‑91 GTGC‑TAAGTGATATGGTAAAATCACTTGCGCACGATTAGATATACGTAAATTACTTGTAGGAATGCCACGTTCATTTAATCCGTCTAATTC > 1:434598/1‑91 TGC‑TAAGTGATATGGTAAAATCACTTGCGCACGATTAGATATACGTATATTACTTGTAGGAATGCCACGTTCATTTAATCCGTCTAATTCT > 1:1979167/1‑91 C‑TAAGTGATATGGTAAAATCACTTGCGCACGATTAGATATACGTAAATTACTTGTAGGAATGCCACGTTCATTTAATCCGTCTAATTCTTT < 1:2511596/91‑1 GAGTCGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/22676‑22769‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgc‑TAAGTGATATGGTAAAATCACTTGCGCACGATTAGATATACGTAAATTACTTGTAGGAATGCCACGTTCATTTAATCCGTCTAATTCTTT < USA300TCH1516_ALE/22794‑22705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |