BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 22769	94 (0.960)	6 (0.060)	5/152	NT	6.6%	coding (305/1284 nt)	purA	Adenylosuccinate synthetase
*	?	USA300TCH1516_ALE	= 22794	81 (0.870)	6 (0.060)	5/152	NT	6.6%	coding (330/1284 nt)	purA	Adenylosuccinate synthetase

Only 100 of 104 total aligned reads displayed.

GAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCATATGTAGACAAAGTT  >  USA300TCH1516_ALE/22704‑22884

gAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTa                                                                                            <  1:1948590/91‑1 (MQ=255)

 aaaGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAg                                                                                           <  1:2511596‑M2/91‑2 (MQ=255)

    gAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgcac                                                                                        >  1:3710469‑M2/1‑87 (MQ=255)

    gAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgcac                                                                                        >  1:3710008‑M2/1‑87 (MQ=255)

    gAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgcac                                                                                        >  1:434598‑M2/1‑87 (MQ=255)

    gAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgcac                                                                                        >  1:285418‑M2/1‑87 (MQ=255)

     aaTTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGcaca                                                                                       >  1:1697405/1‑91 (MQ=255)

     aaTTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGcaca                                                                                       >  1:1699296/1‑91 (MQ=255)

      aTTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACaa                                                                                      >  1:3086335/1‑91 (MQ=255)

      aTTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACaa                                                                                      <  1:559815/91‑1 (MQ=255)

       ttAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAg                                                                                     <  1:1743815/91‑1 (MQ=255)

       ttAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAg                                                                                     >  1:1315640/1‑91 (MQ=255)

       ttAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAg                                                                                     >  1:106889/1‑91 (MQ=255)

        tAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGa                                                                                    <  1:559775/91‑1 (MQ=255)

          gACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATg                                                                                  <  1:1385813/91‑1 (MQ=255)

          gACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATg                                                                                  <  1:2220281/91‑1 (MQ=255)

          gACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCCAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATg                                                                                  >  1:4140279/1‑91 (MQ=255)

           aCGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGa                                                                                 >  1:663176/1‑91 (MQ=255)

           aCGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGa                                                                                 >  1:2216070/1‑91 (MQ=255)

                ttAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATg                                                                            <  1:105965/91‑1 (MQ=255)

                ttAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATg                                                                            <  1:1825456/91‑1 (MQ=255)

                  aaaTGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaa                                                                          >  1:401940/1‑91 (MQ=255)

                  aaaTGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaa                                                                          >  1:2581026/1‑91 (MQ=255)

                  aaaTGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaa                                                                          >  1:2581651/1‑91 (MQ=255)

                  aaaTGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaa                                                                          >  1:1508945/1‑91 (MQ=255)

                     tGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaagaa                                                                       >  1:1096966/1‑91 (MQ=255)

                     tGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaagaa                                                                       <  1:45157/91‑1 (MQ=255)

                       aaCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACg                                                                     >  1:516097/1‑91 (MQ=255)

                        aCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGATCGt                                                                    >  1:3336988/1‑91 (MQ=255)

                        aCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGt                                                                    <  1:1626717/91‑1 (MQ=255)

                        aCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGt                                                                    >  1:3945153/1‑91 (MQ=255)

                        aCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGt                                                                    >  1:562401/1‑91 (MQ=255)

                         cGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGtt                                                                   <  1:567884/91‑1 (MQ=255)

                          gTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGttt                                                                  <  1:3456679/91‑1 (MQ=255)

                           tggtaTTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTa                                                                 <  1:658619/87‑1 (MQ=255)

                            ggCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTGTAc                                                                >  1:3217674/1‑91 (MQ=255)

                             gCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACg                                                               <  1:3700709/91‑1 (MQ=255)

                             gCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACg                                                               <  1:3700546/91‑1 (MQ=255)

                               aTTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACgtg                                                             >  1:713500/1‑91 (MQ=255)

                                ttCGTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTAAgtgg                                                            <  1:3273181/91‑1 (MQ=255)

                                   gtACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGa                                                         >  1:545854/2‑91 (MQ=255)

                                   cTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGa                                                         <  1:2890127/91‑1 (MQ=255)

                                    tACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGAc                                                        <  1:3799653/91‑1 (MQ=255)

                                     aCAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACa                                                       >  1:885053/1‑91 (MQ=255)

                                     aCAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACa                                                       >  1:1032789/1‑91 (MQ=255)

                                     aCAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACa                                                       <  1:3113783/91‑1 (MQ=255)

                                      cAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTTACaa                                                      >  1:3449768/1‑91 (MQ=255)

                                       aaGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAAt                                                     <  1:2771598/91‑1 (MQ=255)

                                        aGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATa                                                    >  1:661217/1‑91 (MQ=255)

                                           aaTTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGa                                                 >  1:3467222/1‑91 (MQ=255)

                                           aaTTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGa                                                 >  1:3466357/1‑91 (MQ=255)

                                           aaTGTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGa                                                 <  1:3336279/91‑1 (MQ=255)

                                             tttACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGAtt                                               >  1:678721/1‑91 (MQ=255)

                                             tttACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGAtt                                               >  1:3334256/1‑91 (MQ=255)

                                              ttACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTg                                              >  1:509689/1‑91 (MQ=255)

                                                aCGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGt                                            >  1:3653045/1‑91 (MQ=255)

                                                 cGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTa                                           >  1:123443/1‑91 (MQ=255)

                                                 cGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTa                                           >  1:1820287/1‑91 (MQ=255)

                                                  gTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTAc                                          >  1:3299051/1‑91 (MQ=255)

                                                   tataTCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACa                                         <  1:1140818/91‑1 (MQ=255)

                                                   tataTCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACa                                         <  1:262667/91‑1 (MQ=255)

                                                     tatCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAAc                                       <  1:111967/91‑1 (MQ=255)

                                                     tatCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAAc                                       <  1:111982/91‑1 (MQ=255)

                                                     tatCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAAc                                       >  1:1283649/1‑91 (MQ=255)

                                                     tatCTAAGCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAAc                                       <  1:2173893/91‑1 (MQ=255)

                                                      atCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACt                                      >  1:2162108/1‑91 (MQ=255)

                                                      atCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACt                                      >  1:2404584/1‑91 (MQ=255)

                                                      atCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACt                                      >  1:808541/1‑91 (MQ=255)

                                                         tAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTaaa                                   >  1:2378236/1‑91 (MQ=255)

                                                           aTCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTaaaaa                                 <  1:309862/91‑1 (MQ=255)

                                                           aTCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTaaaaa                                 >  1:676567/1‑91 (MQ=255)

                                                             cgggcgcAAGTGATTTTACCATGTCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAg                               >  1:1919961/4‑91 (MQ=255)

                                                             cGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAg                               <  1:3367497/91‑1 (MQ=255)

                                                             cGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAg                               <  1:2017625/91‑1 (MQ=255)

                                                             cGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAg                               <  1:2017614/91‑1 (MQ=255)

                                                               tGCGCAAGTGATTTTACCATATCACTTAgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattct                             <  1:3122013‑M2/91‑64 (MQ=255)

                                                                gcgcAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTa                            <  1:723896/91‑1 (MQ=255)

                                                                gcgcAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTa                            <  1:720508/91‑1 (MQ=255)

                                                                gcgcAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTa                            >  1:3378307/1‑91 (MQ=255)

                                                                gcgcAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTa                            >  1:2264374/1‑91 (MQ=255)

                                                                gcgcAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTa                            >  1:2264888/1‑91 (MQ=255)

                                                                   cAAGTGATTTTACCATATCACTTAgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattctttca                         <  1:894810‑M2/91‑68 (MQ=255)

                                                                   cAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCg                         <  1:239833/91‑1 (MQ=255)

                                                                    aaGTGATTTTACCATATCACTTAgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattctttcaa                        <  1:1394187‑M2/91‑69 (MQ=255)

                                                                     aGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGt                       <  1:3981760/91‑1 (MQ=255)

                                                                     aGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGt                       >  1:1393344/1‑91 (MQ=255)

                                                                      gTGATTTTACCATATCACTTAgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattctttcaata                      <  1:1848544‑M2/91‑71 (MQ=255)

                                                                      gTGATTTTACCATATCACTTAgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattctttcaata                      <  1:1471708‑M2/91‑71 (MQ=255)

                                                                       tGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTcc                     <  1:3136947/91‑1 (MQ=255)

                                                                       tGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTcc                     <  1:2057498/91‑1 (MQ=255)

                                                                        gATTTTACCATATCACTTGcgcacgattagntatacgtaaattacntgtaggaatgcnacgtncatttaatccgtctaattctttcaatag                    <  1:1324777‑M2/91‑73 (MQ=255)

                                                                        gATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCa                    <  1:2499553/91‑1 (MQ=255)

                                                                           tttACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCa                 >  1:3148941/1‑91 (MQ=255)

                                                                               ccATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCATATg             >  1:852394/1‑91 (MQ=255)

                                                                                  tatCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCATATGTAg          <  1:2580832/91‑1 (MQ=255)

                                                                                  tatCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCATATGTAg          <  1:2580777/91‑1 (MQ=255)

                                                                                   atCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCTAGCATATGTAGa         <  1:3182662/91‑1 (MQ=255)

                                                                                    tCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCATATGTAGAc        <  1:4073788/91‑1 (MQ=255)

                                                                                    tCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCATATGTAGAc        <  1:4075806/91‑1 (MQ=255)

                                                                                       cTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCATATGTAGACaaa     >  1:3127811/1‑91 (MQ=255)

GAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTATCGGTCCAGCATATGTAGACAAAGTT  >  USA300TCH1516_ALE/22704‑22884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.