BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 22769	94 (0.960)	6 (0.060)	5/152	NT	6.6%	coding (305/1284 nt)	purA	Adenylosuccinate synthetase
*	?	USA300TCH1516_ALE	= 22794	81 (0.870)	6 (0.060)	5/152	NT	6.6%	coding (330/1284 nt)	purA	Adenylosuccinate synthetase

Only 100 of 132 total aligned reads displayed.

TCGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTAT  >  USA300TCH1516_ALE/22679‑22859

tCGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGC                                                                                            >  1:2534473‑M1/1‑91 (MQ=255)

 cGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTgcg                                                                                           >  1:1200530/1‑91 (MQ=255)

    tgttgATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCaa                                                                                        <  1:3161645/91‑1 (MQ=255)

    tgttgATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCaa                                                                                        <  1:1108559/91‑1 (MQ=255)

    tgttgATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCaa                                                                                        >  1:1427839/1‑91 (MQ=255)

    tgttgATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGCGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCaa                                                                                        >  1:1427934/1‑91 (MQ=255)

    tgttgATCCAGTTGCACTATTGAAAGAATTAGACGGAATAAATGAACGTGGCATTCCTTCAAGTAATTTACGTATATCTAATCGTGCGCaa                                                                                        >  1:3527585/1‑91 (MQ=255)

     gttgATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAg                                                                                       <  1:1687408/91‑1 (MQ=255)

      ttgATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGt                                                                                      <  1:3976839/91‑1 (MQ=255)

      ttgATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGt                                                                                      <  1:3894644/91‑1 (MQ=255)

       tgATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTg                                                                                     <  1:745340/91‑1 (MQ=255)

         aTCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGAt                                                                                   <  1:95513/91‑1 (MQ=255)

          tCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGAtt                                                                                  <  1:2844209/91‑1 (MQ=255)

          tCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGAtt                                                                                  <  1:2000964/91‑1 (MQ=255)

           ccAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGAttt                                                                                 >  1:3495592/1‑91 (MQ=255)

           ccAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGAttt                                                                                 >  1:2677555/1‑91 (MQ=255)

              gTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTAc                                                                              <  1:2218633/91‑1 (MQ=255)

              gTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTAc                                                                              >  1:3364682/1‑91 (MQ=255)

              gTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTAc                                                                              <  1:196618/91‑1 (MQ=255)

               ttGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTAcc                                                                             >  1:976282/1‑91 (MQ=255)

               ttGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTAcc                                                                             >  1:920822/1‑91 (MQ=255)

                tGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCa                                                                            <  1:1142958/91‑1 (MQ=255)

                 gCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCat                                                                           <  1:1090095/91‑1 (MQ=255)

                 gCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCat                                                                           <  1:2013821/91‑1 (MQ=255)

                   aCTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCatat                                                                         >  1:463303/1‑91 (MQ=255)

                    cTATTGAAAGAATTAGACGGATTAAATGNACGTNGCATTCCTACANGTAATTTACGTATANCTAATCGTGCgcaagtgatatggtaaaatc                                                                        <  1:1324777‑M1/91‑21 (MQ=255)

                     tATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCtaagtgatatggtaaaatcac                                                                       <  1:1848544‑M1/91‑22 (MQ=255)

                      aTTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATccc                                                                      >  1:2059394/1‑89 (MQ=255)

                      aTTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCAc                                                                      <  1:377843/91‑1 (MQ=255)

                      aTTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCAc                                                                      >  1:400711/1‑91 (MQ=255)

                      aTTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCAc                                                                      <  1:1112949/91‑1 (MQ=255)

                       ttGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCtaagtgatatggtaaaatcactt                                                                     <  1:1394187‑M1/91‑24 (MQ=255)

                         gAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTa                                                                   <  1:1948590/91‑1 (MQ=255)

                            aGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCtaagtgatatggtaaaatcacttgcgca                                                                <  1:3122013‑M1/91‑29 (MQ=255)

                            aGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATATACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgca                                                                >  1:1979167‑M2/1‑88 (MQ=255)

                             gAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgcac                                                               >  1:285418‑M2/1‑87 (MQ=255)

                             gAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgcac                                                               >  1:434598‑M2/1‑87 (MQ=255)

                             gAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgcac                                                               >  1:3710469‑M2/1‑87 (MQ=255)

                             gAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAgcac                                                               >  1:3710008‑M2/1‑87 (MQ=255)

                              aaTTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGcaca                                                              >  1:1699296/1‑91 (MQ=255)

                               aTTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACaa                                                             >  1:3086335/1‑91 (MQ=255)

                               aTTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACaa                                                             <  1:559815/91‑1 (MQ=255)

                                ttAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAg                                                            >  1:1315640/1‑91 (MQ=255)

                                ttAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAg                                                            >  1:106889/1‑91 (MQ=255)

                                ttAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAg                                                            <  1:1743815/91‑1 (MQ=255)

                                 tAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGa                                                           <  1:559775/91‑1 (MQ=255)

                                   gACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATg                                                         <  1:2220281/91‑1 (MQ=255)

                                   gACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCCAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATg                                                         >  1:4140279/1‑91 (MQ=255)

                                    aCGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGa                                                        >  1:663176/1‑91 (MQ=255)

                                         ttAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATg                                                   <  1:105965/91‑1 (MQ=255)

                                           aaaTGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaa                                                 >  1:401940/1‑91 (MQ=255)

                                           aaaTGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaa                                                 >  1:1508945/1‑91 (MQ=255)

                                           aaaTGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaa                                                 >  1:2581651/1‑91 (MQ=255)

                                           aaaTGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATgaa                                                 >  1:2581026/1‑91 (MQ=255)

                                                aaCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACg                                            >  1:516097/1‑91 (MQ=255)

                                                 aCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGATCGt                                           >  1:3336988/1‑91 (MQ=255)

                                                 aCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGt                                           >  1:562401/1‑91 (MQ=255)

                                                 aCGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGt                                           <  1:1626717/91‑1 (MQ=255)

                                                   gTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGttt                                         <  1:3456679/91‑1 (MQ=255)

                                                    tggtaTTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTa                                        <  1:658619/87‑1 (MQ=255)

                                                     ggCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTGTAc                                       >  1:3217674/1‑91 (MQ=255)

                                                      gCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACg                                      <  1:3700709/91‑1 (MQ=255)

                                                      gCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACg                                      <  1:3700546/91‑1 (MQ=255)

                                                        aTTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACgtg                                    >  1:713500/1‑91 (MQ=255)

                                                         ttCGTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTAAgtgg                                   <  1:3273181/91‑1 (MQ=255)

                                                            cTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGa                                <  1:2890127/91‑1 (MQ=255)

                                                             tACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGAc                               <  1:3799653/91‑1 (MQ=255)

                                                              aCAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACa                              >  1:885053/1‑91 (MQ=255)

                                                              aCAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACa                              <  1:3113783/91‑1 (MQ=255)

                                                              aCAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACa                              >  1:1032789/1‑91 (MQ=255)

                                                               cAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTTACaa                             >  1:3449768/1‑91 (MQ=255)

                                                                aaGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAAt                            <  1:2771598/91‑1 (MQ=255)

                                                                 aGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATa                           >  1:661217/1‑91 (MQ=255)

                                                                    aaTTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGa                        >  1:3467222/1‑91 (MQ=255)

                                                                    aaTGTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGa                        <  1:3336279/91‑1 (MQ=255)

                                                                      tttACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGAtt                      >  1:678721/1‑91 (MQ=255)

                                                                       ttACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTg                     >  1:509689/1‑91 (MQ=255)

                                                                         aCGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGt                   >  1:3653045/1‑91 (MQ=255)

                                                                          cGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTa                  >  1:1820287/1‑91 (MQ=255)

                                                                           gTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTAc                 >  1:3299051/1‑91 (MQ=255)

                                                                            tataTCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACa                <  1:1140818/91‑1 (MQ=255)

                                                                              tatCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAAc              <  1:111967/91‑1 (MQ=255)

                                                                              tatCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAAc              >  1:1283649/1‑91 (MQ=255)

                                                                              tatCTAAGCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAAc              <  1:2173893/91‑1 (MQ=255)

                                                                               atCTAATCGTGCGCAAGTGATTTTACCGTATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACt             <  1:4015803/91‑1 (MQ=255)

                                                                               atCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACt             >  1:808541/1‑91 (MQ=255)

                                                                               atCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACt             >  1:2162108/1‑91 (MQ=255)

                                                                               atCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACt             >  1:2404584/1‑91 (MQ=255)

                                                                                  tAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTaaa          >  1:2378236/1‑91 (MQ=255)

                                                                                      cgggcgcAAGTGATTTTACCATGTCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAg      >  1:1919961/4‑91 (MQ=255)

                                                                                      cGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAg      <  1:2017614/91‑1 (MQ=255)

                                                                                      cGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAg      <  1:2017625/91‑1 (MQ=255)

                                                                                       gTGCtaagtgatatggtaaaatcacttgcgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattc     >  1:434598‑M1/1‑4 (MQ=255)

                                                                                       gTGCtaagtgatatggtaaaatcacttgcgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattc     >  1:3710469‑M1/1‑4 (MQ=255)

                                                                                        tGCtaagtgatatggtaaaatcacttgcgcacgattagatatacgtatattacttgtaggaatgccacgttcatttaatccgtctaattct    >  1:1979167‑M1/1‑3 (MQ=255)

                                                                                        tGCGCAAGTGATTTTACCATATCACTTAgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattct    <  1:3122013‑M2/91‑64 (MQ=255)

                                                                                         gcgcAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTa   >  1:3378307/1‑91 (MQ=255)

                                                                                         gcgcAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTa   <  1:720508/91‑1 (MQ=255)

                                                                                         gcgcAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTa   >  1:2264374/1‑91 (MQ=255)

                                                                                          ctaagtgatatggtaaaatcacttgcgcacgattagatatacgtaaattacttgtaggaatgccacgttcatttaatccgtctaattcttt  <  1:2511596‑M1/91‑91 (MQ=255)

TCGTTGTTGATCCAGTTGCACTATTGAAAGAATTAGACGGATTAAATGAACGTGGCATTCCTACAAGTAATTTACGTATATCTAATCGTGCGCAAGTGATTTTACCATATCACTTAGCACAAGATGAATATGAAGAACGTTTACGTGGTGACAATAAGATTGGTACAACTAAAAAAGGTAT  >  USA300TCH1516_ALE/22679‑22859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.