| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 42499 = | 102 (1.040) | 10 (0.130) | 8/124 | NT | 13.2% | coding (1467/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | 42544 = | 52 (0.680) | coding (1422/1524 nt) | USA300TCH1516_00035 | hypothetical protein | |||||
AATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/42604‑42499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTT > USA300TCH1516_ALE/42544‑42632 AATGGCACTTAATATGAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATA > 1:487288/1‑91AATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATA > 1:2138265/1‑91 ATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAG > 1:1613397/1‑91 ATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAG > 1:1613785/1‑91 GGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAA < 1:2008096/91‑1 GCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTATAAAAAAAGACAATTTCTATATTATTTCA‑ATAGAA > 1:1379595/1‑91 GCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAA < 1:412723/91‑1 GCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAA > 1:3890172/1‑91 CACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAAT < 1:1708952/91‑1 TTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGT < 1:3783512/91‑1 TTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGT < 1:1093367/91‑1 TTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGT < 1:1092904/91‑1 TTAATATAAGAAAAGTAGTAGCTCAACGAGCTAAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGT < 1:501893/91‑1 TAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTC < 1:740920/91‑1 TAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTC < 1:779914/91‑1 TAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTC > 1:2202844/1‑91 AATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCT > 1:3750073/1‑91 AATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCT > 1:2036514/1‑91 ATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTT > 1:3251601/1‑91 ATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTT > 1:2116853/1‑91 ATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTT > 1:2114740/1‑91 TAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTT < 1:2778433/91‑1 AAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTT < 1:593738/91‑1 AAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTT > 1:1700582/1‑91 AAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT < 1:2105330/91‑1 AAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT < 1:2105293/91‑1 AAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT < 1:911852/91‑1 TTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTGTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTT > 1:3299102/1‑91 AAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTA > 1:1926813/1‑91 ACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAA > 1:2817623/1‑91 AATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGT > 1:3063996/1‑91 AATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGT > 1:1003364/1‑91 TCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCA > 1:3603997/1‑91 TATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATT > 1:3438418/1‑91 TATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATT > 1:3440403/1‑91 TATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATT > 1:1231128/1‑91 ATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAAT > 1:1215428/1‑91 ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCA > 1:1854794/1‑91 TAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAA < 1:3170593/91‑1 AGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAG < 1:855324/91‑1 AGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAG < 1:3429465/91‑1 AGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAG < 1:855268/91‑1 AGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAG < 1:2658849/91‑1 AAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTT < 1:3115628/91‑1 AAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTT < 1:1822774/91‑1 AATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTC > 1:2428905/1‑91 GTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTT < 1:3788502/91‑1 GTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTT > 1:2787120/1‑91 TCTTTTTTATAAATTTTTTGATTGTTTTCAGCTAGTTGAGCTACTAATTTTCTTATATTGAGTGCCATTAATACAAAACCAAGTTCTCTTT > 1:3312600/1‑91 TCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTT > 1:967076/1‑91 CTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTT < 1:4087387/91‑1 CTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTT < 1:3939154/91‑1 CTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTT > 1:2420505/1‑91 CTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTT < 1:2362566/91‑1 CTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTT > 1:3268841/1‑91 TTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGA > 1:3051467/1‑91 TTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGA < 1:3438427/91‑1 TTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTT < 1:3621209/91‑1 AATGGCACTTAATATAAGAAAAGTAGTAGCTCAACGAGCTGAAAATAATCAAAAAATTTAT‑AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/42604‑42499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTT > USA300TCH1516_ALE/42544‑42632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |