| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 42499 = | 102 (1.040) | 10 (0.130) | 8/124 | NT | 13.2% | coding (1467/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | 42544 = | 52 (0.680) | coding (1422/1524 nt) | USA300TCH1516_00035 | hypothetical protein | |||||
Only 100 of 155 total aligned reads displayed.
ACAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTT > USA300TCH1516_ALE/42409‑42589 | aCAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGa < 1:1390524/91‑1 (MQ=255) aagtcaaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttataa < 1:3621209‑M1/2‑1 (MQ=255) aGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaa > 1:2180796/1‑91 (MQ=255) aGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaa > 1:367286/1‑91 (MQ=255) aGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaa > 1:1580581/1‑91 (MQ=255) tcaaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttataaaaa > 1:3051467‑M1/87‑91 (MQ=255) gctGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGcaaaa > 1:2441042/3‑91 (MQ=255) gTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaaa > 1:2437840/1‑91 (MQ=255) gTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaaaa > 1:476525/1‑91 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg > 1:2420505‑M1/85‑91 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg < 1:2362566‑M1/7‑1 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg < 1:4087387‑M1/7‑1 (MQ=255) aaaagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAg > 1:3268841‑M1/85‑91 (MQ=255) aagagaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGAc > 1:2787120‑M1/83‑91 (MQ=255) agagCAAGCAGAATTAATGGCAAGTCCGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACa > 1:3742026/1‑91 (MQ=255) agagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACa > 1:1590980/1‑91 (MQ=255) agagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACa > 1:3476186/1‑91 (MQ=255) agagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACa > 1:333273/1‑91 (MQ=255) gagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACaa > 1:759617/1‑91 (MQ=255) gagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACaa > 1:759618/1‑91 (MQ=255) gaacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAAtt > 1:2428905‑M1/79‑91 (MQ=255) aacttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAAttt < 1:3115628‑M1/14‑1 (MQ=255) aagcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTc > 1:625587/1‑91 (MQ=255) cttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCt < 1:3429465‑M1/16‑1 (MQ=255) cttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCt < 1:855268‑M1/16‑1 (MQ=255) cttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCt < 1:2658849‑M1/16‑1 (MQ=255) cttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCt < 1:855324‑M1/16‑1 (MQ=255) ttggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTa < 1:3170593‑M1/17‑1 (MQ=255) gcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTa > 1:3585808/1‑91 (MQ=255) tggttttgtattaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAt > 1:1854794‑M1/74‑91 (MQ=255) caGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAt < 1:2534382/91‑1 (MQ=255) caGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAt < 1:2533147/91‑1 (MQ=255) aGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAt‑t < 1:693945/91‑1 (MQ=255) aaTTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGa < 1:2735819/91‑1 (MQ=255) ttAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGaaa > 1:376620/1‑91 (MQ=255) ttAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGaaa > 1:1872356/1‑91 (MQ=255) ttAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGaaa > 1:2984009/1‑91 (MQ=255) aTGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAaataa > 1:1003922/1‑91 (MQ=255) aTGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAaataa > 1:2266992/1‑91 (MQ=255) attaatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAaataat > 1:1215428‑M1/65‑91 (MQ=255) ggCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAataata > 1:1916450/1‑91 (MQ=255) cAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAAtata > 1:409237/1‑91 (MQ=255) aatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAAtata > 1:3438418‑M1/62‑91 (MQ=255) aatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAAtata > 1:3440403‑M1/62‑91 (MQ=255) aatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAAtata > 1:1231128‑M1/62‑91 (MQ=255) tCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGaaa < 1:1812263/91‑1 (MQ=255) cAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAt > 1:1936611/1‑91 (MQ=255) cAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAt > 1:1936584/1‑91 (MQ=255) cAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAt < 1:1695766/91‑1 (MQ=255) cAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAt < 1:1166997/91‑1 (MQ=255) acttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAtt > 1:1003364‑M1/56‑91 (MQ=255) aGCGATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAtt < 1:3265845/91‑1 (MQ=255) aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAtt > 1:2037667/1‑91 (MQ=255) aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAtt < 1:1957006/91‑1 (MQ=255) aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAAtt < 1:896006/91‑1 (MQ=255) ttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGt > 1:2817623‑M1/54‑91 (MQ=255) aaTAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTc > 1:1306899/1‑91 (MQ=255) tAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCtt > 1:178841/1‑91 (MQ=255) aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTta < 1:982359/91‑1 (MQ=255) aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTta < 1:2069965/91‑1 (MQ=255) aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTta < 1:2068989/91‑1 (MQ=255) taaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATaa < 1:1444384/91‑1 (MQ=255) aaagtagtagctcaacgagctgaaaataatcaaaaaatttatAACAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATaa > 1:3299102‑M1/43‑91 (MQ=255) aatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAt > 1:1704458/1‑91 (MQ=255) atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGCCAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtt > 1:3292929/1‑91 (MQ=255) atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtt > 1:1493692/1‑91 (MQ=255) atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtt > 1:1169891/1‑91 (MQ=255) tAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtttttt < 1:1688719/91‑1 (MQ=255) tAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAAtttttt < 1:930241/91‑1 (MQ=255) tGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGat < 1:557076/91‑1 (MQ=255) gAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGatt > 1:551554/1‑91 (MQ=255) tCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGattatt < 1:1993114/91‑1 (MQ=255) ccGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAttt < 1:2635299/91‑1 (MQ=255) ccGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAttt < 1:2635283/91‑1 (MQ=255) gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg < 1:958162/91‑1 (MQ=255) gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg < 1:3599656/91‑1 (MQ=255) gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg < 1:3599433/91‑1 (MQ=255) gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg < 1:3599561/91‑1 (MQ=255) aCATAAAGTTCTTGGATAAGTGAAATAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc < 1:3875038/91‑1 (MQ=255) aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc > 1:396556/1‑91 (MQ=255) aTAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTc > 1:105122/1‑91 (MQ=255) tAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCg < 1:3809568/91‑1 (MQ=255) tAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCg < 1:3618043/91‑1 (MQ=255) tAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATACAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCg > 1:4137937/1‑91 (MQ=255) aaaGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGt < 1:1153452/91‑1 (MQ=255) aaGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGtt < 1:1744886/91‑1 (MQ=255) aaGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGtt > 1:3722496/1‑91 (MQ=255) aGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTg > 1:1728212/1‑91 (MQ=255) tGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac < 1:2413351/91‑1 (MQ=255) ggATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact > 1:581214/1‑91 (MQ=255) ggATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact > 1:2654663/1‑91 (MQ=255) gATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctacta < 1:719912/91‑1 (MQ=255) aTAAGCGAAAAAAGACAATTTCTAT‑AGAAATAATATAGAGATTGTCTTTTTTAGAAATTTTTTGATTATTTTCAGCTCGTTGAGCtactac < 1:3857830/91‑1 (MQ=255) aaGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACtt < 1:1253422/91‑1 (MQ=255) gTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACtttt > 1:3800089/1‑91 (MQ=255) tGAAAAAAGACTATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc < 1:3761468/91‑1 (MQ=255) gAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt < 1:1916098/91‑1 (MQ=255) AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt < 1:2105330‑M1/91‑1 (MQ=255) AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt < 1:911852‑M1/91‑1 (MQ=255) AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt < 1:593738‑M1/91‑1 (MQ=255) | ACAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTT > USA300TCH1516_ALE/42409‑42589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |