BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	42499 =	102 (1.040)	10 (0.130)	8/124	NT	13.2%	coding (1467/1524 nt)	USA300TCH1516_00035	hypothetical protein
*	?	USA300TCH1516_ALE	42544 =	52 (0.680)	10 (0.130)	8/124	NT	13.2%	coding (1422/1524 nt)	USA300TCH1516_00035	hypothetical protein

Only 100 of 126 total aligned reads displayed.

AAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTA  >  USA300TCH1516_ALE/42454‑42634

aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTt‑a                                                                                            <  1:2068875/91‑1 (MQ=255)

aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTt‑a                                                                                            <  1:2068989/91‑1 (MQ=255)

aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTt‑a                                                                                            <  1:1655975/91‑1 (MQ=255)

aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTt‑a                                                                                            <  1:1182710/91‑1 (MQ=255)

 aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTt‑at                                                                                           >  1:2187495/1‑91 (MQ=255)

   taaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATaa                                                                                         <  1:1444384/91‑1 (MQ=255)

   aaagtagtagctcaacgagctgaaaataatcaaaaaatttatAACAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATaa                                                                                         >  1:3299102‑M1/43‑91 (MQ=255)

     aatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAAt                                                                                       >  1:725870/1‑91 (MQ=255)

      atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGCCAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAAtt                                                                                      >  1:3292929/1‑91 (MQ=255)

      atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAAtt                                                                                      >  1:1493692/1‑91 (MQ=255)

      atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAAtt                                                                                      >  1:1169891/1‑91 (MQ=255)

          tAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAAtttttt                                                                                  <  1:1688719/91‑1 (MQ=255)

          tAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAAtttttt                                                                                  <  1:930241/91‑1 (MQ=255)

             tGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGat                                                                               <  1:557076/91‑1 (MQ=255)

              gAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGatt                                                                              >  1:551554/1‑91 (MQ=255)

                 tCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGattatt                                                                           <  1:1993641/91‑1 (MQ=255)

                 tCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGattatt                                                                           <  1:1993114/91‑1 (MQ=255)

                  ccGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTAttt                                                                          <  1:2635299/91‑1 (MQ=255)

                  ccGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTAttt                                                                          <  1:2635283/91‑1 (MQ=255)

                     ggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCa                                                                       <  1:3747746/91‑1 (MQ=255)

                      gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAg                                                                      <  1:3599561/91‑1 (MQ=255)

                      gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAg                                                                      <  1:958162/91‑1 (MQ=255)

                      gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAg                                                                      <  1:3599433/91‑1 (MQ=255)

                      gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAg                                                                      <  1:3599538/91‑1 (MQ=255)

                       aCATAAAGTTCTTGGATAAGTGAAATAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGc                                                                     <  1:3875038/91‑1 (MQ=255)

                       aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGc                                                                     <  1:2431555/91‑1 (MQ=255)

                         aTAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTc                                                                   >  1:105122/1‑91 (MQ=255)

                          tAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCg                                                                  <  1:3618043/91‑1 (MQ=255)

                          tAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCg                                                                  <  1:3809568/91‑1 (MQ=255)

                          tAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATACAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCg                                                                  >  1:4137937/1‑91 (MQ=255)

                           aaaGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGt                                                                 <  1:1154106/91‑1 (MQ=255)

                            aaGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGtt                                                                >  1:3722496/1‑91 (MQ=255)

                            aaGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGtt                                                                <  1:1744886/91‑1 (MQ=255)

                             aGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTg                                                               >  1:1728212/1‑91 (MQ=255)

                             aGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTg                                                               >  1:1728321/1‑91 (MQ=255)

                              gTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGa                                                              >  1:872997/1‑91 (MQ=255)

                                   tGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                         <  1:2413351/91‑1 (MQ=255)

                                   tGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac                                                         >  1:1956014/1‑91 (MQ=255)

                                    ggATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                        >  1:581214/1‑91 (MQ=255)

                                    ggATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact                                                        >  1:2654663/1‑91 (MQ=255)

                                     gATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGctacta                                                       <  1:719912/91‑1 (MQ=255)

                                      aTAAGCGAAAAAAGACAATTTCTAT‑AGAAATAATATAGAGATTGTCTTTTTT‑AGAAATTTTTTGATTATTTTCAGCTCGTTGAGCtactac                                                      <  1:3857830/91‑1 (MQ=255)

                                        aaGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACtt                                                    <  1:1253422/91‑1 (MQ=255)

                                          gTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACtttt                                                  >  1:3800089/1‑91 (MQ=255)

                                           tGAAAAAAGACTATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc                                                 <  1:3761468/91‑1 (MQ=255)

                                            gAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt                                                <  1:1916098/91‑1 (MQ=255)

                                            gAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCt                                                <  1:1915767/91‑1 (MQ=255)

                                             AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                               <  1:911852‑M1/91‑1 (MQ=255)

                                             AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                               <  1:2105330‑M1/91‑1 (MQ=255)

                                             AAAAAAGACAATTTCTATATTATTTCA‑ATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                               <  1:2105293‑M1/91‑1 (MQ=255)

                                             AAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCtt                                               >  1:1700582‑M1/1‑91 (MQ=255)

                                              AAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTta                                              <  1:2778433‑M1/91‑1 (MQ=255)

                                                 AAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTatat                                           >  1:2116853‑M1/1‑91 (MQ=255)

                                                 AAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTatat                                           >  1:2114740‑M1/1‑91 (MQ=255)

                                                 AAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTatat                                           >  1:3251601‑M1/1‑91 (MQ=255)

                                                  AGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATAtt                                          >  1:3750073‑M1/1‑91 (MQ=255)

                                                  AGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATAtt                                          >  1:2036514‑M1/1‑91 (MQ=255)

                                                   GACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                         <  1:740920‑M1/91‑1 (MQ=255)

                                                   GACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                         <  1:779914‑M1/91‑1 (MQ=255)

                                                   GACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTa                                         >  1:2202844‑M1/1‑91 (MQ=255)

                                                    ACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTTAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                        <  1:501893‑M1/91‑1 (MQ=255)

                                                    ACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                        <  1:1093367‑M1/91‑1 (MQ=255)

                                                    ACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                        <  1:1092904‑M1/91‑1 (MQ=255)

                                                      acaatttctatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTaa                                        >  1:2817623‑M2/39‑91 (MQ=255)

                                                       ATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTg                                     <  1:1708952‑M1/91‑1 (MQ=255)

                                                        aatttctatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGt                                      >  1:1003364‑M2/37‑91 (MQ=255)

                                                        aatttctatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGt                                      >  1:3063996‑M2/37‑91 (MQ=255)

                                                        TTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGc                                    <  1:412723‑M1/91‑1 (MQ=255)

                                                        TTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGc                                    >  1:3890172‑M1/1‑91 (MQ=255)

                                                         TTCTAT‑TGAAATAATATAGAAATTGTCTTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGc                                    >  1:1379595‑M1/1‑91 (MQ=255)

                                                           CTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAt                                 >  1:1613785‑M1/1‑91 (MQ=255)

                                                            tctatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCa                                  >  1:3603997‑M2/33‑91 (MQ=255)

                                                              tatattatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCAtt                                >  1:3438418‑M2/31‑91 (MQ=255)

                                                                 attatttcaatagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAAt                             >  1:1215428‑M2/28‑91 (MQ=255)

                                                                   aataatATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACa                          >  1:401371/1‑91 (MQ=255)

                                                                   aataatATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACa                          >  1:2415978/1‑91 (MQ=255)

                                                                    ataataTAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACaa                         <  1:377965/91‑1 (MQ=255)

                                                                      aataTAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTACGTGCCATTAATACaaaa                       >  1:3555521/1‑91 (MQ=255)

                                                                          atagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCa                    >  1:1854794‑M2/19‑91 (MQ=255)

                                                                           tagaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCaa                   <  1:3170593‑M2/74‑1 (MQ=255)

                                                                            agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  <  1:3429465‑M2/75‑1 (MQ=255)

                                                                            agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  <  1:855268‑M2/75‑1 (MQ=255)

                                                                            agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  <  1:855324‑M2/75‑1 (MQ=255)

                                                                            agaaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAg                  <  1:2658849‑M2/75‑1 (MQ=255)

                                                                              aaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGtt                <  1:3115628‑M2/77‑1 (MQ=255)

                                                                              aaattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGtt                <  1:1822774‑M2/77‑1 (MQ=255)

                                                                               aattgtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTtc               >  1:2428905‑M2/14‑91 (MQ=255)

                                                                                   gtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt           <  1:3788502‑M2/82‑1 (MQ=255)

                                                                                   gtcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtt           >  1:2787120‑M2/10‑91 (MQ=255)

                                                                                    tcttttttATAAATTTTTTGATTGTTTTCAGCTAGTTGAGCTACTAATTTTCTTATATTGAGTGCCATTAATACAAAACCAAGTTCTCttt          >  1:3312600‑M2/9‑91 (MQ=255)

                                                                                    tcttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCttt          >  1:967076‑M2/9‑91 (MQ=255)

                                                                                     cttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt         <  1:4087387‑M2/84‑1 (MQ=255)

                                                                                     cttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt         <  1:3939154‑M2/84‑1 (MQ=255)

                                                                                     cttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt         >  1:3268841‑M2/8‑91 (MQ=255)

                                                                                     cttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt         >  1:2420505‑M2/8‑91 (MQ=255)

                                                                                     cttttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCtttt         <  1:2362566‑M2/84‑1 (MQ=255)

                                                                                       tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa       <  1:3438427‑M2/86‑1 (MQ=255)

                                                                                       tttttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGa       >  1:3051467‑M2/6‑91 (MQ=255)

                                                                                          ttATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACtt    <  1:3621209‑M2/89‑1 (MQ=255)

                                                                                            ataAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTa  <  1:2048883/91‑1 (MQ=255)

AAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAT‑TGAAATAATATAGAAATTGTCTTTTTT‑ATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTTATATTAAGTGCCATTAATACAAAACCAAGTTCTCTTTTGACTTTA  >  USA300TCH1516_ALE/42454‑42634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.