| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 51234 = | 112 (1.140) | 5 (0.060) | 5/144 | NT | 5.1% | intergenic (‑32/‑107) | USA300HOU_RS00210/USA300HOU_RS00215 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 51274 = | 85 (0.960) | intergenic (‑72/‑67) | USA300HOU_RS00210/USA300HOU_RS00215 | hypothetical protein/hypothetical protein | |||||
CCCTCCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/51330‑51234‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAAA > USA300TCH1516_ALE/51274‑51362 CCCTCCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATAT < 1:2114389/91‑1CCCTCCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATAT < 1:2115567/91‑1CCCTCCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATAT < 1:2117577/91‑1 CTCCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTG < 1:99736/91‑1 CTCCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTG > 1:3481960/1‑91 CTCCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTG > 1:2375847/1‑91 CCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTGAT < 1:2398173/91‑1 CCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTGATT > 1:2093162/1‑91 ATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTGATTGgc > 1:439715/1‑89 ATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAA > 1:396343/1‑91 CAATCAATTGAAGATAGTTTAACCTATATGATATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGG > 1:2577508/1‑91 TCAATTGAAGATAGTTTAACCTATATGATATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGA > 1:2333917/1‑91 ATTGAAGATAGTTTAACCTATATGATATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGG > 1:2962106/1‑91 TGAAGATAGTTTAACCTATATGATATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGG > 1:2465402/1‑91 ATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAG < 1:1203465/91‑1 ATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAG > 1:2540841/1‑91 TTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGA < 1:2534383/91‑1 TTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGA > 1:2195595/1‑91 TTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGA < 1:4005797/91‑1 TGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAA < 1:1110484/91‑1 TTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACTCTAGAAGAA > 1:3964213/1‑91 TTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAA < 1:3285976/91‑1 TTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAA < 1:3286079/91‑1 TTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAA > 1:3356464/1‑91 TTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAA > 1:1654092/1‑91 TGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAAA > 1:1525722/1‑91 CCCTCCCCATTTTTTGTTCCGCGTCTAATCATAATGCTTCATTTATGCTTATTATAGCAATCAATTGAAGATAGTTTAACCTATATGATATTGATTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/51330‑51234‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAAA > USA300TCH1516_ALE/51274‑51362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |