BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	51234 =	112 (1.140)	5 (0.060)	5/144	NT	5.1%	intergenic (‑32/‑107)	USA300HOU_RS00210/USA300HOU_RS00215	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	51274 =	85 (0.960)	5 (0.060)	5/144	NT	5.1%	intergenic (‑72/‑67)	USA300HOU_RS00210/USA300HOU_RS00215	hypothetical protein/hypothetical protein

Only 100 of 127 total aligned reads displayed.

GCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAAATT  >  USA300TCH1516_ALE/51184‑51364

gctTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGc                                                                                            <  1:4126738/91‑1 (MQ=255)

gctTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGc                                                                                            <  1:588590/91‑1 (MQ=255)

gctTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGc                                                                                            <  1:3025619/91‑1 (MQ=255)

      ttgttccgcgtctaatcataatgcttcatttatgcttattatagCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataat                                                                                      >  1:396343‑M1/45‑91 (MQ=255)

      aTTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataat                                                                                      <  1:3986180/91‑1 (MQ=255)

       tttCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataata                                                                                     <  1:850163/91‑1 (MQ=255)

       tttCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataata                                                                                     >  1:779498/1‑91 (MQ=255)

       tttCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataata                                                                                     >  1:2717086/1‑91 (MQ=255)

          cTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGc                                                                                  <  1:1307029/91‑1 (MQ=255)

          cTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGc                                                                                  >  1:4107717/1‑91 (MQ=255)

           ttATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCa                                                                                 >  1:2331778/1‑91 (MQ=255)

               tCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATaaa                                                                             >  1:620694/1‑91 (MQ=255)

               tCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATaaa                                                                             <  1:527063/91‑1 (MQ=255)

                cATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAAt                                                                            <  1:610904/91‑1 (MQ=255)

                  ttttAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGa                                                                          >  1:2808222/1‑91 (MQ=255)

                  ttttAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGa                                                                          >  1:751837/1‑91 (MQ=255)

                    ttAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAg                                                                        <  1:2875125/91‑1 (MQ=255)

                      aaaaTTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCa                                                                      >  1:3594468/1‑91 (MQ=255)

                         aTTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTa                                                                   >  1:3546071/1‑91 (MQ=255)

                         aTTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTa                                                                   >  1:3412522/1‑91 (MQ=255)

                          ttCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTAt                                                                  >  1:1622039/1‑91 (MQ=255)

                           tcctccAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATg                                                                 <  1:1042986/91‑1 (MQ=255)

                           tcctccAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATg                                                                 <  1:1043484/91‑1 (MQ=255)

                           tcctccAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATg                                                                 >  1:953564/1‑91 (MQ=255)

                            cctccAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGa                                                                >  1:820977/1‑91 (MQ=255)

                             ctccAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGAt                                                               <  1:495167/91‑1 (MQ=255)

                                cAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAg                                                            >  1:1581631/1‑91 (MQ=255)

                                 aataatTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGa                                                           >  1:2504601/1‑91 (MQ=255)

                                 aataatTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGa                                                           >  1:2504535/1‑91 (MQ=255)

                                  ataatTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGAc                                                          <  1:1701704/91‑1 (MQ=255)

                                  ataatTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGAc                                                          >  1:2623637/1‑91 (MQ=255)

                                      tttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCgg                                                      <  1:1689798/91‑1 (MQ=255)

                                      tttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCgg                                                      >  1:1405551/1‑91 (MQ=255)

                                      tttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCgg                                                      >  1:1405453/1‑91 (MQ=255)

                                       ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa                                                     >  1:524232/1‑91 (MQ=255)

                                       ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa                                                     >  1:3461485/1‑91 (MQ=255)

                                       ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa                                                     <  1:2646117/91‑1 (MQ=255)

                                       ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa                                                     >  1:2846247/1‑91 (MQ=255)

                                       ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa                                                     >  1:528698/1‑91 (MQ=255)

                                        tttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGaa                                                    <  1:4043424/91‑1 (MQ=255)

                                         ttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAAc                                                   <  1:1907989/91‑1 (MQ=255)

                                          tAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACa                                                  >  1:2593463/1‑91 (MQ=255)

                                           attatagcaatcaattgaagatagtttaacctatatgatattgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACaa                                                 >  1:396343‑M2/48‑91 (MQ=255)

                                           aaGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACaa                                                 >  1:348907/1‑91 (MQ=255)

                                            aGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACaaa                                                >  1:282331/1‑91 (MQ=255)

                                                gcCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAt                                            >  1:439715‑M1/3‑91 (MQ=255)

                                                gTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAt                                            >  1:1001670/1‑91 (MQ=255)

                                                gTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAt                                            >  1:2986895/1‑91 (MQ=255)

                                                gTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAt                                            >  1:2986763/1‑91 (MQ=255)

                                                gTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAt                                            >  1:2986704/1‑91 (MQ=255)

                                                 tcaatcaaTATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATg                                           <  1:2264769/91‑1 (MQ=255)

                                                   AATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATggg                                         >  1:2093162‑M1/1‑91 (MQ=255)

                                                    ATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATgggg                                        <  1:2398173‑M1/91‑1 (MQ=255)

                                                      CAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAg                                      >  1:3481960‑M1/1‑91 (MQ=255)

                                                      CAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAg                                      >  1:2375847‑M1/1‑91 (MQ=255)

                                                        ATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAggg                                    <  1:2114389‑M1/91‑1 (MQ=255)

                                                        ATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAggg                                    <  1:2117577‑M1/91‑1 (MQ=255)

                                                        ATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAggg                                    <  1:2115567‑M1/91‑1 (MQ=255)

                                                          tgaagatagtttaacctatatgatattgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAggggg                                  >  1:2465402‑M2/33‑91 (MQ=255)

                                                          atcgtataGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAggggg                                  <  1:3734037/87‑1 (MQ=255)

                                                          atCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAggggg                                  >  1:2789101/1‑91 (MQ=255)

                                                           tCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAgggggg                                 <  1:2711541/91‑1 (MQ=255)

                                                           tCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAgggggg                                 <  1:1777481/91‑1 (MQ=255)

                                                           tCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAgggggg                                 <  1:2614223/91‑1 (MQ=255)

                                                            cATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAggggggg                                <  1:1783228/91‑1 (MQ=255)

                                                            cATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAggggggg                                >  1:1419390/1‑91 (MQ=255)

                                                             atatAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGt                               >  1:3084115/1‑91 (MQ=255)

                                                             atatAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGt                               >  1:188625/1‑91 (MQ=255)

                                                             atatAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCAGTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGt                               >  1:3298102/1‑91 (MQ=255)

                                                             atatAGGTTAAACTATCTGCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAGGGGGAGGGGGGGt                               <  1:986349/91‑1 (MQ=255)

                                                              tataGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGta                              <  1:1346247/91‑1 (MQ=255)

                                                                gaGGTTAAACTAACTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATAATAAGAAGAAAAAAAAAAAATGGGGAGGGGGGGtata                            <  1:2252145/90‑1 (MQ=255)

                                                                 aGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGtatat                           <  1:166645/91‑1 (MQ=255)

                                                                 aGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGtatat                           <  1:4095595/91‑1 (MQ=255)

                                                                    ttAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATAtt                        >  1:97694/1‑91 (MQ=255)

                                                                      aatcTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGa                      <  1:1019916/88‑1 (MQ=255)

                                                                      aaaCTATCTTCAAGTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGa                      <  1:705828/91‑1 (MQ=255)

                                                                         cTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATAc                   >  1:1364075/1‑91 (MQ=255)

                                                                         cTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATAc                   <  1:1618986/91‑1 (MQ=255)

                                                                         cTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATAc                   <  1:1617332/91‑1 (MQ=255)

                                                                          tATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATAcc                  >  1:1485483/1‑91 (MQ=255)

                                                                            tCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTa                >  1:920651/1‑91 (MQ=255)

                                                                            tCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGAGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTa                >  1:920731/1‑91 (MQ=255)

                                                                             cTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTAc               >  1:1221075/1‑91 (MQ=255)

                                                                             cTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTAc               <  1:2976869/91‑1 (MQ=255)

                                                                             cTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTAc               <  1:624734/91‑1 (MQ=255)

                                                                                cAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCt            >  1:1579576/1‑91 (MQ=255)

                                                                                cAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCt            <  1:3409637/91‑1 (MQ=255)

                                                                                cAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCt            >  1:1579589/1‑91 (MQ=255)

                                                                                  attgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTag          <  1:1203465‑M2/83‑1 (MQ=255)

                                                                                  attgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTag          >  1:2540841‑M2/9‑91 (MQ=255)

                                                                                   ttgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTaga         >  1:2195595‑M2/8‑91 (MQ=255)

                                                                                   ttgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTaga         <  1:4005797‑M2/84‑1 (MQ=255)

                                                                                   ttgattgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTaga         <  1:2534383‑M2/84‑1 (MQ=255)

                                                                                       ttgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAgaagaa     >  1:1654092‑M2/4‑91 (MQ=255)

                                                                                       ttgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAgaagaa     <  1:3285976‑M2/88‑1 (MQ=255)

                                                                                       ttgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAgaagaa     >  1:3356464‑M2/4‑91 (MQ=255)

                                                                                        tgCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGaaa    >  1:1525722‑M2/3‑91 (MQ=255)

                                                                                          cTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAAatt  >  1:1497939/1‑91 (MQ=255)

                                                                                          cTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAAatt  >  1:1143318/1‑91 (MQ=255)

GCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATGGGGAGGGGGGGTATATATTGATACCTACGCTAGAAGAAATT  >  USA300TCH1516_ALE/51184‑51364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.