New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 51234 =112 (1.140)5 (0.060) 5/144 NT 5.1% intergenic (‑32/‑107) USA300HOU_RS00210/USA300HOU_RS00215 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 51274 = 85 (0.960)intergenic (‑72/‑67) USA300HOU_RS00210/USA300HOU_RS00215 hypothetical protein/hypothetical protein

Only 100 of 147 total aligned reads displayed.

AAAGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATG  >  USA300TCH1516_ALE/51144‑51323
                                                                                          |                                                                                         
aaaGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtc                                                                                           >  1:3824370/1‑91 (MQ=255)
 aaGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtca                                                                                          >  1:2332682/1‑91 (MQ=255)
 aaGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtca                                                                                          >  1:213033/1‑91 (MQ=255)
 aaGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtca                                                                                          >  1:1693821/1‑91 (MQ=255)
 aaGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtca                                                                                          <  1:1689430/91‑1 (MQ=255)
 aaGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtca                                                                                          <  1:1689402/91‑1 (MQ=255)
  ttcttctagcgtaggtatcaatatataccccccctccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagcaa                                                                                         <  1:3285976‑M1/3‑1 (MQ=255)
  ttcttctagcgtaggtatcaatatataccccccctccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagcaa                                                                                         <  1:3286079‑M1/3‑1 (MQ=255)
  aGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtcaa                                                                                         <  1:2834385/91‑1 (MQ=255)
    aTTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtcaatc                                                                                       <  1:487683/91‑1 (MQ=255)
     ttctagcgtaggtatcaatatataccccccctccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagcaatca                                                                                      <  1:1110484‑M1/6‑1 (MQ=255)
      ttAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGtcaatcaa                                                                                     <  1:2891235/91‑1 (MQ=255)
      tctagcgtaggtatcaatatataccccccctccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagcaatcaa                                                                                     >  1:2195595‑M1/85‑91 (MQ=255)
      tctagcgtaggtatcaatatataccccccctccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagcaatcaa                                                                                     <  1:4005797‑M1/7‑1 (MQ=255)
       tAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAACATTCCTCCAATAATTTTTAAGGAGTcaatcaat                                                                                    >  1:3677334/1‑91 (MQ=255)
       tAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTcaatcaat                                                                                    <  1:4050676/91‑1 (MQ=255)
       tAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTcaatcaat                                                                                    <  1:549857/91‑1 (MQ=255)
       ctagcgtaggtatcaatatataccccccctccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagcaatcaat                                                                                    >  1:2540841‑M1/84‑91 (MQ=255)
        aGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAata                                                                                   >  1:1508804/1‑91 (MQ=255)
         gCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAatat                                                                                  <  1:2173040/91‑1 (MQ=255)
         gCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAatat                                                                                  >  1:2733321/1‑91 (MQ=255)
          cAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATc                                                                                 >  1:2524114/1‑91 (MQ=255)
          cAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATc                                                                                 >  1:2522746/1‑91 (MQ=255)
          cAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATc                                                                                 >  1:1530758/1‑91 (MQ=255)
          cAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATc                                                                                 >  1:1530220/1‑91 (MQ=255)
          cAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATc                                                                                 <  1:2189949/91‑1 (MQ=255)
          cAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATc                                                                                 >  1:2510695/1‑91 (MQ=255)
          cAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCGTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATc                                                                                 >  1:3588503/1‑91 (MQ=255)
             ttataaaattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCata                                                                              <  1:3155522/91‑1 (MQ=255)
               ataaaattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCAtata                                                                            >  1:3789586/1‑91 (MQ=255)
               ataaaattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCAtata                                                                            <  1:3814333/91‑1 (MQ=255)
                 aaaattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAgg                                                                          <  1:3137012/91‑1 (MQ=255)
                 aaaattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAgg                                                                          >  1:2712382/1‑91 (MQ=255)
                 aaaattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAgg                                                                          <  1:3525148/91‑1 (MQ=255)
                 aaaattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAgg                                                                          <  1:1175139/91‑1 (MQ=255)
                  aaattataaaGCTTTTCTTGCTGCTTGGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGt                                                                         >  1:1935279/1‑91 (MQ=255)
                   aattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGtt                                                                        >  1:2028004/1‑91 (MQ=255)
                   aattataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGtt                                                                        >  1:2027888/1‑91 (MQ=255)
                    attataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTa                                                                       >  1:2180202/1‑91 (MQ=255)
                    attataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTa                                                                       >  1:418368/1‑91 (MQ=255)
                    attataaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTa                                                                       >  1:2771344/1‑91 (MQ=255)
                         aaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTa                                                                  >  1:926004/1‑91 (MQ=255)
                         aaaGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTa                                                                  >  1:926024/1‑91 (MQ=255)
                           aGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATc                                                                <  1:4056041/91‑1 (MQ=255)
                           aGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATc                                                                <  1:1034330/91‑1 (MQ=255)
                           aGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATc                                                                <  1:1977714/91‑1 (MQ=255)
                            gCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCt                                                               <  1:339568/91‑1 (MQ=255)
                              ttttCTTGCTGATTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTc                                                             <  1:3763153/91‑1 (MQ=255)
                               tttCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCa                                                            <  1:3670220/91‑1 (MQ=255)
                               ccccctccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagCAATCAATATCATATAGGTTAAACTATCTTCa                                                            >  1:2465402‑M1/60‑91 (MQ=255)
                                 ccctccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagCAATCAATATCATATAGGTTAAACTATCTTCAat                                                          >  1:2962106‑M1/58‑91 (MQ=255)
                                  cTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAatt                                                         <  1:3956944/91‑1 (MQ=255)
                                    tccccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagCAATCAATATCATATAGGTTAAACTATCTTCAattga                                                       >  1:2333917‑M1/55‑91 (MQ=255)
                                     gctgctTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAattgat                                                      >  1:1953353/1‑91 (MQ=255)
                                       ccattttttgttccgcgtctaatcataatgcttcatttatgcttattatagCAATCAATATCATATAGGTTAAACTATCTTCAattgattg                                                    >  1:2577508‑M1/52‑91 (MQ=255)
                                        gctTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGc                                                   <  1:2493606/91‑1 (MQ=255)
                                        gctTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGc                                                   <  1:3025619/91‑1 (MQ=255)
                                        gctTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGc                                                   <  1:1519348/91‑1 (MQ=255)
                                        gctTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGc                                                   <  1:4126738/91‑1 (MQ=255)
                                           tAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCtat                                                <  1:451598/91‑1 (MQ=255)
                                              ttgttccgcgtctaatcataatgcttcatttatgcttattatagCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataat                                             >  1:396343‑M1/45‑91 (MQ=255)
                                              aTTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataat                                             <  1:3986180/91‑1 (MQ=255)
                                               tttCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataata                                            >  1:2717086/1‑91 (MQ=255)
                                               tttCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataata                                            >  1:779498/1‑91 (MQ=255)
                                               tttCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTataata                                            <  1:850163/91‑1 (MQ=255)
                                                  cTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGc                                         <  1:1307029/91‑1 (MQ=255)
                                                  cTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGc                                         >  1:4107717/1‑91 (MQ=255)
                                                   ttATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCa                                        >  1:2331778/1‑91 (MQ=255)
                                                       tCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATaaa                                    >  1:620694/1‑91 (MQ=255)
                                                        cATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAAt                                   <  1:610904/91‑1 (MQ=255)
                                                         aTTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATg                                  <  1:1308118/91‑1 (MQ=255)
                                                          ttttAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGa                                 >  1:751837/1‑91 (MQ=255)
                                                          ttttAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGa                                 >  1:2808222/1‑91 (MQ=255)
                                                            ttAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAg                               <  1:2875125/91‑1 (MQ=255)
                                                              aaaaTTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCa                             >  1:3594468/1‑91 (MQ=255)
                                                                aaTTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCAtt                           >  1:301760/1‑91 (MQ=255)
                                                                 aTTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTa                          >  1:3412522/1‑91 (MQ=255)
                                                                 aTTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTa                          >  1:3546071/1‑91 (MQ=255)
                                                                  ttCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTAt                         >  1:1622039/1‑91 (MQ=255)
                                                                   tcctccAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATg                        <  1:1042986/91‑1 (MQ=255)
                                                                    cctccAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGa                       >  1:820977/1‑91 (MQ=255)
                                                                     ctccAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGAt                      <  1:495167/91‑1 (MQ=255)
                                                                        cAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAg                   >  1:1581631/1‑91 (MQ=255)
                                                                         aataatTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGa                  >  1:2504601/1‑91 (MQ=255)
                                                                          ataatTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGAc                 <  1:1701704/91‑1 (MQ=255)
                                                                          ataatTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGAc                 >  1:2623637/1‑91 (MQ=255)
                                                                              tttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCgg             >  1:1405551/1‑91 (MQ=255)
                                                                              tttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCgg             >  1:1405453/1‑91 (MQ=255)
                                                                              tttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCgg             <  1:1689798/91‑1 (MQ=255)
                                                                               ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa            <  1:2646117/91‑1 (MQ=255)
                                                                               ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa            >  1:524232/1‑91 (MQ=255)
                                                                               ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa            >  1:528698/1‑91 (MQ=255)
                                                                               ttttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGa            >  1:2846247/1‑91 (MQ=255)
                                                                                 ttAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAAc          <  1:1907989/91‑1 (MQ=255)
                                                                                   aaGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACaa        >  1:348907/1‑91 (MQ=255)
                                                                                    aGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACaaa       >  1:282331/1‑91 (MQ=255)
                                                                                        gTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAt   >  1:2986895/1‑91 (MQ=255)
                                                                                        gTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAt   >  1:2986763/1‑91 (MQ=255)
                                                                                        gTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAAt   >  1:1001670/1‑91 (MQ=255)
                                                                                         tcaatcaaTATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATg  <  1:2264769/91‑1 (MQ=255)
                                                                                          |                                                                                         
AAAGATTTAGCAATTATAAAATTATAAAGCTTTTCTTGCTGCTTAGATTTCTTATTCATTTTAAAATTCCTCCAATAATTTTTAAGGAGTCAATCAATATCATATAGGTTAAACTATCTTCAATTGATTGCTATAATAAGCATAAATGAAGCATTATGATTAGACGCGGAACAAAAAATG  >  USA300TCH1516_ALE/51144‑51323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.