| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 61689 | 128 (1.300) | 8 (0.090) | 3/146 | NT | 6.0% | intergenic (‑536/+35) | USA300HOU_RS00260/USA300TCH1516_00053 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 61720 | 136 (1.520) | intergenic (‑567/+4) | USA300HOU_RS00260/USA300TCH1516_00053 | hypothetical protein/hypothetical protein | |||||
TTTAAGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/61594‑61689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaggctACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCTAAC < USA300TCH1516_ALE/61720‑61633 TTTAAGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCT > 1:4130606/1‑91TTTAAGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCT > 1:3523397/1‑91 TTAAGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTA > 1:3402622/1‑91 AAGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGG < 1:1128746/91‑1 AAGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGG < 1:1128779/91‑1 AAGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGG < 1:2553129/91‑1 AGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGC < 1:3106889/91‑1 AGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGC > 1:1125387/1‑91 AGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGC > 1:3005798/1‑91 AGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGC > 1:2966495/1‑91 AGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGC > 1:1562090/1‑91 GAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCT < 1:1444467/91‑1 CTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTACTTATCCCCTGTAAAATACAGAGAATT < 1:51569/91‑1 CTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTACTTATCCCCTGTAAAATACAGAGAATT < 1:3278125/91‑1 cTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAAGACTATGTTCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGC < 1:3295816/90‑1 TTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGC < 1:339593/91‑1 TTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGC < 1:939960/91‑1 TTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGC < 1:3907677/91‑1 TTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGC < 1:2021417/91‑1 AGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTA < 1:4023675/91‑1 CTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTC < 1:3693453/91‑1 TAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCT < 1:3138232/91‑1 TAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCT < 1:3137676/91‑1 TAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCT > 1:2314586/1‑91 TAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCT > 1:2961981/1‑91 AGGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCTA > 1:2732700/1‑91 AGGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCTA < 1:2450221/91‑1 GGCTACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCTAA > 1:2714201/1‑91 GCTACTTATGCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCTAAC < 1:3980542/91‑1 TTTAAGAGATATTATTTTCACAAAAAAAGAATGCTTTTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/61594‑61689‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctaggctACTTATCCCCTGTAAAATACAGAGAATTAGCAGCCTAGAACATAGTGTTTTTATTAAGTTCCCATTTTAAGGGTTCAGTGCCTCTAAC < USA300TCH1516_ALE/61720‑61633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |