BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 61689	128 (1.300)	8 (0.090)	3/146	NT	6.0%	intergenic (‑536/+35)	USA300HOU_RS00260/USA300TCH1516_00053	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 61720	136 (1.520)	8 (0.090)	3/146	NT	6.0%	intergenic (‑567/+4)	USA300HOU_RS00260/USA300TCH1516_00053	hypothetical protein/hypothetical protein

Only 100 of 168 total aligned reads displayed.

TTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGCTG  >  USA300TCH1516_ALE/61630‑61810

tttGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGt                                                                                            <  1:565005/91‑1 (MQ=255)

    ttAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTagcc                                                                                        >  1:2714201‑M2/1‑87 (MQ=255)

     tAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTagcct                                                                                       >  1:2732700‑M2/1‑86 (MQ=255)

      agagGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTagccta                                                                                      <  1:3137676‑M2/91‑7 (MQ=255)

      agagGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTagccta                                                                                      >  1:2961981‑M2/1‑85 (MQ=255)

      agagGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTagccta                                                                                      >  1:2314586‑M2/1‑85 (MQ=255)

       gagGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTagcctag                                                                                     <  1:3693453‑M2/91‑8 (MQ=255)

           cACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGtttt                                                                                 <  1:4098864/91‑1 (MQ=255)

             cTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTttg                                                                               >  1:3967430/1‑91 (MQ=255)

             cTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTttg                                                                               >  1:1702647/1‑91 (MQ=255)

               gAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTACTTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTttgtt                                                                             <  1:3602925/91‑1 (MQ=255)

               gAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTttgtt                                                                             >  1:3752411/1‑91 (MQ=255)

                aaCCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTttgttg                                                                            >  1:2803734/1‑91 (MQ=255)

                 aCCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGa                                                                           >  1:1218980/1‑91 (MQ=255)

                 aCCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGa                                                                           >  1:404506/1‑91 (MQ=255)

                 aCCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGa                                                                           >  1:48546/1‑91 (MQ=255)

                 aCCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGa                                                                           >  1:155740/1‑91 (MQ=255)

                  cccTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGaa                                                                          <  1:2765150/91‑1 (MQ=255)

                  cccTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGaa                                                                          <  1:3139679/91‑1 (MQ=255)

                  cccTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGaa                                                                          <  1:711318/91‑1 (MQ=255)

                   ccTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAAt                                                                         >  1:1481766/1‑91 (MQ=255)

                     ttAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTc                                                                       <  1:684972/91‑1 (MQ=255)

                      tAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCg                                                                      >  1:786686/1‑91 (MQ=255)

                      tAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCg                                                                      >  1:2423187/1‑91 (MQ=255)

                       aaaaTGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGa                                                                     <  1:2105051/91‑1 (MQ=255)

                         aaTGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGatt                                                                   >  1:780770/1‑91 (MQ=255)

                             ggAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGattatta                                                               <  1:1428281/91‑1 (MQ=255)

                              gAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGattattat                                                              >  1:3757892/1‑91 (MQ=255)

                              gAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGattattat                                                              >  1:2380584/1‑91 (MQ=255)

                              gAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGattattat                                                              >  1:1891767/1‑91 (MQ=255)

                              gAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGattattat                                                              <  1:4095800/91‑1 (MQ=255)

                              gAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGattattat                                                              >  1:1634819/1‑91 (MQ=255)

                                aCTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGAttattatta                                                            <  1:1475755/91‑1 (MQ=255)

                                aCTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGAttattatta                                                            <  1:4098746/91‑1 (MQ=255)

                                 cTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATtattattat                                                           <  1:3851247/91‑1 (MQ=255)

                                 cTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATtattattat                                                           >  1:607975/1‑91 (MQ=255)

                                  ttAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTTCAGGGGATTAGTCGCCTAGTTTGTGTTGAATTCGATTATTATtata                                                          <  1:3313442/91‑1 (MQ=14)

                                  ttAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATtata                                                          >  1:2665854/1‑91 (MQ=255)

                                    aataaAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGt                                                        >  1:1145286/1‑91 (MQ=255)

                                     ataaAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGtt                                                       >  1:1649098/1‑91 (MQ=255)

                                     ataaAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGtt                                                       >  1:2343360/1‑91 (MQ=255)

                                      taaAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGttt                                                      >  1:1836003/1‑91 (MQ=255)

                                       aaaaaCACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGtttt                                                     >  1:726551/1‑91 (MQ=255)

                                        aaaaCACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGttttt                                                    <  1:3824864/91‑1 (MQ=255)

                                         aaaCACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTa                                                   <  1:3803988/91‑1 (MQ=255)

                                         aaaCACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTa                                                   <  1:509430/91‑1 (MQ=255)

                                          aaCACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTaa                                                  <  1:480396/91‑1 (MQ=255)

                                            cacTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATg                                                <  1:3257182/91‑1 (MQ=255)

                                            cacTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATg                                                <  1:3668035/91‑1 (MQ=255)

                                             acTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGt                                               >  1:1273758/1‑91 (MQ=255)

                                             acTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGt                                               <  1:4062929/91‑1 (MQ=255)

                                              cTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTa                                              >  1:3920112/1‑91 (MQ=255)

                                               tATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAt                                             >  1:2442794/1‑91 (MQ=255)

                                               tATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAt                                             <  1:1229173/91‑1 (MQ=255)

                                               tATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAt                                             <  1:1076492/91‑1 (MQ=255)

                                                aTGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAtt                                            >  1:404377/1‑91 (MQ=255)

                                                aTGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAtt                                            >  1:404821/1‑91 (MQ=255)

                                                aTGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAtt                                            >  1:123281/1‑91 (MQ=255)

                                                  gTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAtttt                                          <  1:2501747/91‑1 (MQ=255)

                                                  gTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAtttt                                          <  1:2501496/91‑1 (MQ=255)

                                                   ttCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTc                                         <  1:2380151/91‑1 (MQ=255)

                                                   ttCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAGTTTc                                         <  1:3267575/91‑1 (MQ=255)

                                                    tCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCg                                        <  1:3463343/91‑1 (MQ=255)

                                                      tAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTagcctagaacatagtgtttttattaagttcccattttaagggttcagtgcctct                                      <  1:4023675‑M2/91‑55 (MQ=255)

                                                        ggCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACaa                                    >  1:1682822/1‑91 (MQ=255)

                                                           tgctAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAatat                                 >  1:3094181/1‑91 (MQ=255)

                                                            gctAATTCTCTGTATTTTACAGGGGATAAGTagcctagaacatagtgtttttattaagttcccattttaagggttcagtgcctctaacaaa                                <  1:939960‑M2/91‑61 (MQ=255)

                                                            gctAATTCTCTGTATTTTACAGGGGATAAGTagcctagaacatagtgtttttattaagttcccattttaagggttcagtgcctctaacaaa                                <  1:339593‑M2/91‑61 (MQ=255)

                                                            gctAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATc                                >  1:107660/1‑91 (MQ=255)

                                                            gctAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATc                                >  1:215508/1‑91 (MQ=255)

                                                            gctAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATc                                >  1:109780/1‑91 (MQ=255)

                                                            gctAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATc                                >  1:2948403/1‑91 (MQ=255)

                                                            gctAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATc                                >  1:2669301/1‑91 (MQ=255)

                                                            gctAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATc                                >  1:1374766/1‑91 (MQ=255)

                                                             ctAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTCTAGTTTTTAATGTATTTTCGACAATATCt                               >  1:3875375/1‑91 (MQ=255)

                                                               aaTTCTCTGTATTTTACAGGGGATAAGTagcctagaacatagtgtttttattaagttcccattttaagggttcagtgcctctaacaaaaag                             <  1:3278125‑M2/91‑64 (MQ=255)

                                                               aaTTCTCTGTATTTTACAGGGGATAAGTagcctagaacatagtgtttttattaagttcccattttaagggttcagtgcctctaacaaaaag                             <  1:51569‑M2/91‑64 (MQ=255)

                                                                 ttCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTa                           <  1:3381684/91‑1 (MQ=255)

                                                                  tctcTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTAc                          >  1:2041712/1‑91 (MQ=255)

                                                                  tctcTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTAc                          >  1:4116294/1‑91 (MQ=255)

                                                                  tctcTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTAc                          >  1:31115/1‑91 (MQ=255)

                                                                     ctGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAat                       <  1:3716643/91‑1 (MQ=255)

                                                                      tGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAata                      <  1:1975744/91‑1 (MQ=255)

                                                                       gTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAatat                     <  1:1347943/91‑1 (MQ=255)

                                                                        tATTTTACAGGGGATAAGTAGCCTAGTTTTTGCTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATg                    <  1:4059634/91‑1 (MQ=255)

                                                                         aTTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGa                   >  1:2926900/1‑91 (MQ=255)

                                                                           tttACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGAtt                 <  1:3158467/91‑1 (MQ=255)

                                                                             tACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTag               <  1:224700/91‑1 (MQ=255)

                                                                             tACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTag               >  1:3567991/1‑91 (MQ=255)

                                                                              aCAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTaga              >  1:2742040/1‑91 (MQ=255)

                                                                               cAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTagag             <  1:2930556/91‑1 (MQ=255)

                                                                                    gATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGttatt        <  1:1906949/91‑1 (MQ=255)

                                                                                     aTAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGttatta       >  1:2602208/1‑91 (MQ=255)

                                                                                        aGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGc    <  1:3978101/91‑1 (MQ=255)

                                                                                        aGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGc    <  1:823722/91‑1 (MQ=255)

                                                                                        aGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTAGTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGc    <  1:3595649/91‑1 (MQ=255)

                                                                                         gTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGCt   >  1:1167832/1‑91 (MQ=255)

                                                                                          tAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGCTg  <  1:2778719/91‑1 (MQ=255)

                                                                                          tAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGCTg  >  1:1594522/1‑91 (MQ=255)

                                                                                          tAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGCTg  <  1:2778732/91‑1 (MQ=255)

TTTGTTAGAGGCACTGAACCCTTAAAATGGGAACTTAATAAAAACACTATGTTCTAGGCTGCTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGTTTTTGTTGAATTCGATTATTATTATAGTTTTTAATGTATTTTCGACAATATCTATTACAATATGATTAGAGTTATTAAGCTG  >  USA300TCH1516_ALE/61630‑61810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.