| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 68692 = | 106 (1.080) | 7 (0.080) | 5/144 | NT | 7.1% | coding (808/852 nt) | USA300TCH1516_00061 | hypothetical protein |
| ? | USA300TCH1516_ALE | 68737 = | 89 (1.010) | intergenic (+1/+99) | USA300TCH1516_00061/arcC1_1 | hypothetical protein/Carbamate kinase 1 | |||||
ATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/68787‑68692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAAAG > USA300TCH1516_ALE/68737‑68825 ATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAG < 1:3489615/91‑1ATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAG < 1:3489614/91‑1 CCTAGGGCACTGAACCCTTAAAACGGGAAATTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCC < 1:3332546/91‑1 CTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCT > 1:1610547/1‑91 AGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAG > 1:1254605/1‑91 AGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAG > 1:1958678/1‑91 AGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAG > 1:2305019/1‑91 AGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAG > 1:780943/1‑91 CTAGGCTATTAACTCTCTGTATTTTACAGGGGATAAGTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCT > 1:3190074/1‑91 GGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTCCAGTGCCCTAGG > 1:3631955/1‑91 GCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGA > 1:1044211/1‑91 GCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGA > 1:3374044/1‑91 TATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATT > 1:2028040/1‑91 TATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATT > 1:2028206/1‑91 AATTCTCTGTATTTTACAGGGGATAAGTAGCCTAGAACATGGTGTTCTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAG > 1:723812/1‑91 AGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAAC > 1:821673/1‑91 AGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAAC > 1:1134194/1‑91 GCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACT < 1:2103212/91‑1 CCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTA > 1:271381/1‑91 CTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAA < 1:973183/91‑1 CTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAA > 1:2487096/1‑91 CTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAA > 1:2486531/1‑91 AGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAAAG < 1:2545032/91‑1 ATCCTAGGGCACTGAACCCTTAAAACGGGAACTTAATAAAAACACCATGTTCTAGGCTATTAATTCTCTGTATTTTACAGGGGATAAGTAGCCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/68787‑68692‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAAAG > USA300TCH1516_ALE/68737‑68825 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |