BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	68692 =	106 (1.080)	7 (0.080)	5/144	NT	7.1%	coding (808/852 nt)	USA300TCH1516_00061	hypothetical protein
*	?	USA300TCH1516_ALE	68737 =	89 (1.010)	7 (0.080)	5/144	NT	7.1%	intergenic (+1/+99)	USA300TCH1516_00061/arcC1_1	hypothetical protein/Carbamate kinase 1

Only 100 of 131 total aligned reads displayed.

ATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAAAGTA  >  USA300TCH1516_ALE/68647‑68827

 ttAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGaa                                                                                           >  1:3351327/1‑91 (MQ=255)

  tAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAAc                                                                                          <  1:195528/91‑1 (MQ=255)

   aaaaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACa                                                                                         <  1:3093699/91‑1 (MQ=255)

    aaaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACAt                                                                                        <  1:2288690/91‑1 (MQ=255)

    aaaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACAt                                                                                        <  1:2288941/91‑1 (MQ=255)

     aaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATg                                                                                       >  1:2891285/1‑91 (MQ=255)

     aaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATg                                                                                       >  1:4116965/1‑91 (MQ=255)

       aCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgt                                                                                     >  1:1546869/1‑91 (MQ=255)

        cAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgtg                                                                                    >  1:1922177/1‑91 (MQ=255)

         aataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgtgt                                                                                   >  1:3475102/1‑91 (MQ=255)

         aataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgtgt                                                                                   <  1:2888756/91‑1 (MQ=255)

          ataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGtt                                                                                  >  1:2559071/1‑91 (MQ=255)

          ataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGtt                                                                                  >  1:2559070/1‑91 (MQ=255)

          ataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGtt                                                                                  >  1:2656483/1‑91 (MQ=255)

           taataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAACTACAGAGAATTAATAGCCTAGAACATGGTGttt                                                                                 >  1:3405117/1‑91 (MQ=255)

           taataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGttt                                                                                 >  1:2528122/1‑91 (MQ=255)

           taataataataacaataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGttt                                                                                 >  1:3205510/1‑91 (MQ=255)

               aataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTttat                                                                             <  1:119560/91‑1 (MQ=255)

               aataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTttat                                                                             <  1:1550972/91‑1 (MQ=255)

                 taataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTttatta                                                                           <  1:869779/91‑1 (MQ=255)

                 taataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTttatta                                                                           <  1:872399/91‑1 (MQ=255)

                  aataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTaa                                                                          >  1:2194489/1‑91 (MQ=255)

                   ataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAg                                                                         <  1:1275750/91‑1 (MQ=255)

                     aataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                                                                       >  1:679749/1‑91 (MQ=255)

                     aataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                                                                       <  1:1885918/91‑1 (MQ=255)

                     aataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                                                                       >  1:2310546/1‑91 (MQ=255)

                     aataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                                                                       <  1:1783437/91‑1 (MQ=255)

                      atagtaatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                                                      <  1:3736751/91‑1 (MQ=255)

                      ataataatCGAATTCAACAAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                                                                       <  1:727836/91‑1 (MQ=255)

                      ataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                                                      <  1:1736797/91‑1 (MQ=255)

                      ataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                                                                      <  1:1736707/91‑1 (MQ=255)

                       taataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGCTcc                                                                     <  1:3804412/91‑1 (MQ=255)

                        aataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTccc                                                                    <  1:1805769/91‑1 (MQ=255)

                          taatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGt                                                                  <  1:1902937/91‑1 (MQ=255)

                             tCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGtttt                                                               >  1:4094269/1‑91 (MQ=255)

                                 aTTGAAC‑AAGAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAgg                                                           <  1:3731665/91‑1 (MQ=255)

                                 aTTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAgg                                                           >  1:3881730/1‑91 (MQ=255)

                                  ttCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAggg                                                          <  1:2948217/91‑1 (MQ=255)

                                     aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc                                                       >  1:2725961/1‑91 (MQ=255)

                                     aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc                                                       <  1:1852796/91‑1 (MQ=255)

                                     aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc                                                       <  1:1851550/91‑1 (MQ=255)

                                     aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc                                                       <  1:754951/91‑1 (MQ=255)

                                     aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc                                                       >  1:2723241/1‑91 (MQ=255)

                                      ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa                                                      >  1:3010150/1‑91 (MQ=255)

                                      ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa                                                      <  1:1355317/91‑1 (MQ=255)

                                      ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa                                                      >  1:2112142/1‑91 (MQ=255)

                                      ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa                                                      >  1:864664/1‑91 (MQ=255)

                                      ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa                                                      >  1:842974/1‑91 (MQ=255)

                                      ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGCTTTTATTAAGTTCCCGTTTTAAGGGTTCa                                                      >  1:2244644/1‑91 (MQ=255)

                                         aaaaaCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGt                                                    >  1:1290439/1‑91 (MQ=255)

                                         aaaaaCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGt                                                    <  1:2570237/91‑1 (MQ=255)

                                         aaaaaCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGt                                                    >  1:3904798/1‑91 (MQ=255)

                                             aCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGccc                                                <  1:1038811/91‑1 (MQ=255)

                                              CTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCt                                               >  1:1254605‑M1/1‑91 (MQ=255)

                                              CTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCt                                               >  1:780943‑M1/1‑91 (MQ=255)

                                              CTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCt                                               >  1:1958678‑M1/1‑91 (MQ=255)

                                                 ggctattaattctctgtattttacaggggataagtagcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTCCAGTGCCCTAgg                                            >  1:3631955‑M2/43‑91 (MQ=255)

                                                  gctattaattctctgtattttacaggggataagtagcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGa                                           >  1:1044211‑M2/42‑91 (MQ=255)

                                                  gctattaattctctgtattttacaggggataagtagcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGa                                           >  1:3374044‑M2/42‑91 (MQ=255)

                                                   CTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGAt                                          <  1:3489615‑M1/91‑1 (MQ=255)

                                                    tattaattctctgtattttacaggggataagtagcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGAtt                                         >  1:2028040‑M2/40‑91 (MQ=255)

                                                      cTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATtat                                       <  1:1312205/91‑1 (MQ=255)

                                                       ttATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATtata                                      <  1:3363287/91‑1 (MQ=255)

                                                        tATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAg                                     <  1:1585897/91‑1 (MQ=255)

                                                          tCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGc                                   >  1:2795598/1‑91 (MQ=255)

                                                           ccccTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGct                                  <  1:1170459/91‑1 (MQ=255)

                                                             ccTGTAAAATACAGAGAATCAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGATTTAAGGGTTCAGTGCCCTAGGATTATAGGctct                                >  1:4122930/1‑91 (MQ=255)

                                                               tGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCttt                              <  1:3795788/91‑1 (MQ=255)

                                                               tGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCttt                              <  1:1771377/91‑1 (MQ=255)

                                                                gTAAAATACAGAGAATTAATAGCCTAGAACATTGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGTATTATAGGCTCtttt                             <  1:3536035/91‑1 (MQ=255)

                                                                 tAAAATACATAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTg                            <  1:3964972/91‑1 (MQ=255)

                                                                  aaaaTACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTGAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGt                           >  1:3192352/1‑91 (MQ=255)

                                                                      tACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTtat                       >  1:489117/1‑91 (MQ=255)

                                                                       aCAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTtata                      <  1:3084731/91‑1 (MQ=255)

                                                                        cAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATaa                     >  1:883357/1‑91 (MQ=255)

                                                                          gagaATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAg                   <  1:3613768/91‑1 (MQ=255)

                                                                          gagaATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAg                   >  1:2556411/1‑91 (MQ=255)

                                                                          gagaATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAg                   >  1:2556441/1‑91 (MQ=255)

                                                                           agaATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAgg                  <  1:1556554/91‑1 (MQ=255)

                                                                           agaATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAgg                  >  1:3873567/1‑91 (MQ=255)

                                                                            gaATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGt                 >  1:3170125/1‑91 (MQ=255)

                                                                            gaATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGt                 >  1:1170798/1‑91 (MQ=255)

                                                                             aaTTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTa                <  1:1182425/91‑1 (MQ=255)

                                                                              aTTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTaa               <  1:1794218/91‑1 (MQ=255)

                                                                               ttAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAAt              >  1:550770/1‑91 (MQ=255)

                                                                               ttAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAAt              <  1:1654995/91‑1 (MQ=255)

                                                                                 aaTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTg            <  1:3252404/91‑1 (MQ=255)

                                                                                 aaTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTg            <  1:334593/91‑1 (MQ=255)

                                                                                  aTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGa           >  1:3940188/1‑91 (MQ=255)

                                                                                  aTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGa           <  1:269175/91‑1 (MQ=255)

                                                                                  aTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGa           >  1:1406659/1‑91 (MQ=255)

                                                                                    agcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAAc         >  1:821673‑M2/8‑91 (MQ=255)

                                                                                    agcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAAc         >  1:1134194‑M2/8‑91 (MQ=255)

                                                                                     gcctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACt        <  1:2103212‑M2/85‑1 (MQ=255)

                                                                                      cctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTa       >  1:271381‑M2/6‑91 (MQ=255)

                                                                                       ctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTaa      >  1:2486531‑M2/5‑91 (MQ=255)

                                                                                       ctagAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTaa      >  1:2487096‑M2/5‑91 (MQ=255)

                                                                                         agAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAAAg    <  1:2545032‑M2/89‑1 (MQ=255)

                                                                                           aaCATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAAAGta  <  1:188310/91‑1 (MQ=255)

                                                                                           aaCATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAAAGta  <  1:4089383/91‑1 (MQ=255)

ATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTGTTTATAAAGGTAATTGAACTAAAGTA  >  USA300TCH1516_ALE/68647‑68827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.