BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	68692 =	106 (1.080)	7 (0.080)	5/144	NT	7.1%	coding (808/852 nt)	USA300TCH1516_00061	hypothetical protein
*	?	USA300TCH1516_ALE	68737 =	89 (1.010)	7 (0.080)	5/144	NT	7.1%	intergenic (+1/+99)	USA300TCH1516_00061/arcC1_1	hypothetical protein/Carbamate kinase 1

Only 100 of 134 total aligned reads displayed.

GCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCT  >  USA300TCH1516_ALE/68601‑68782

  ttAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACt                                                                                           <  1:3095615/91‑1 (MQ=255)

   ctttagttcaattacctttataaacaaaagagcctataatcctagggcactgaacccttaaaacgggaacttaataaaaacaccatgttCt                                                                                           <  1:2545032‑M1/2‑1 (MQ=255)

     ttagttcaattacctttataaacaaaagagcctataatcctagggcactgaacccttaaaacgggaacttaataaaaacaccatgttCTAg                                                                                         >  1:2487096‑M1/88‑91 (MQ=255)

       cACTCTAATCACATTGTAATAGATATTGTCGAAAAGTGCATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCt                                                                                      >  1:2391256/1‑91 (MQ=255)

        gttcaattacctttataaacaaaagagcctataatcctagggcactgaacccttaaaacgggaacttaataaaaacaccatgttCTAGGCt                                                                                      >  1:821673‑M1/85‑91 (MQ=255)

        aCTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTa                                                                                     <  1:2605555/91‑1 (MQ=255)

            tAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTa                                                                                 <  1:1954012/91‑1 (MQ=255)

            tAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTa                                                                                 >  1:1732382/1‑91 (MQ=255)

             aaTCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTAt                                                                                >  1:3030528/1‑91 (MQ=255)

              aTCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATc                                                                               <  1:699905/91‑1 (MQ=255)

              aTCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATc                                                                               <  1:699637/91‑1 (MQ=255)

               tCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATcc                                                                              <  1:956682/91‑1 (MQ=255)

                  caTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATGATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCt                                                                           <  1:3596028/91‑1 (MQ=255)

                   aTTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTg                                                                          <  1:2913069/91‑1 (MQ=255)

                     tGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTa                                                                        <  1:2530072/91‑1 (MQ=255)

                     tGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTa                                                                        >  1:155492/1‑91 (MQ=255)

                       tAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTaaa                                                                      >  1:1114909/1‑91 (MQ=255)

                           aGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATAc                                                                  >  1:264951/1‑91 (MQ=255)

                           aGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATAc                                                                  >  1:533852/1‑91 (MQ=255)

                            gATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACa                                                                 >  1:2372727/1‑91 (MQ=255)

                            gATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACa                                                                 <  1:3541568/91‑1 (MQ=255)

                            gATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACa                                                                 <  1:303200/91‑1 (MQ=255)

                              tatTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACaga                                                               <  1:3248178/91‑1 (MQ=255)

                                ttGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAgaga                                                             >  1:1251014/1‑91 (MQ=255)

                                  gTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAt                                                           >  1:1901270/1‑91 (MQ=255)

                                  gTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAt                                                           >  1:554766/1‑91 (MQ=255)

                                   tCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAtt                                                          <  1:1852637/91‑1 (MQ=255)

                                   tCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAtt                                                          <  1:1195919/91‑1 (MQ=255)

                                    ctataatcctagggcactgaacccttaaaacgggaacttaataagaacaccatgttCTAGGCTACTTATCCCCTGTAAAATACAGAGAAtt                                                          >  1:723812‑M1/57‑91 (MQ=255)

                                    cGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTa                                                         >  1:213341/1‑91 (MQ=255)

                                     gAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTaa                                                        >  1:3396773/1‑91 (MQ=255)

                                      aaaaGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAAt                                                       <  1:895468/91‑1 (MQ=255)

                                        aatcctagggcactgaacccttaaaacgggaacttaataaaaacaccatgttCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATa                                                      >  1:2028040‑M1/53‑91 (MQ=255)

                                        aatcctagggcactgaacccttaaaacgggaacttaataaaaacaccatgttCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATa                                                      >  1:2028206‑M1/53‑91 (MQ=255)

                                        aaGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAg                                                     >  1:24034/1‑91 (MQ=255)

                                         aGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGc                                                    >  1:542316/1‑91 (MQ=255)

                                         aGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGc                                                    >  1:1478160/1‑91 (MQ=255)

                                          tcctagggcactgaacccttaaaacgggaacttaataaaaacaccatgttCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGc                                                    >  1:3374044‑M1/51‑91 (MQ=255)

                                          tcctagggcactgaacccttaaaacgggaacttaataaaaacaccatgttCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGc                                                    >  1:1044211‑M1/51‑91 (MQ=255)

                                           tACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCt                                                  <  1:3278263/91‑1 (MQ=255)

                                           tACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCt                                                  <  1:3281229/91‑1 (MQ=255)

                                            aCATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTa                                                 >  1:3904396/1‑91 (MQ=255)

                                            aCATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTa                                                 <  1:1154281/91‑1 (MQ=255)

                                             cATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAg                                                >  1:1424776/1‑91 (MQ=255)

                                             cATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAg                                                >  1:1776205/1‑91 (MQ=255)

                                              agggcactgaacccttaaaacgggaacttaataaaaacaccatgttCTAGGCTACTTATCCCCTGTAAAATACAGAGAGTTAATAGCCTAg                                                >  1:3190074‑M1/47‑91 (MQ=255)

                                              aTTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGa                                               >  1:3367448/1‑91 (MQ=255)

                                                 aaaaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACa                                            >  1:2578854/1‑91 (MQ=255)

                                                  aaaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACAt                                           <  1:2288690/91‑1 (MQ=255)

                                                  aaaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACAt                                           <  1:2288941/91‑1 (MQ=255)

                                                  aaaaCAATAATAATAATAATAATAATCGAATGCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACAt                                           <  1:1878895/91‑1 (MQ=255)

                                                   aaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATg                                          >  1:2891285/1‑91 (MQ=255)

                                                   aaaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATg                                          >  1:4116965/1‑91 (MQ=255)

                                                    aaCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATgg                                         >  1:2511501/1‑91 (MQ=255)

                                                     aCAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgt                                        >  1:1546869/1‑91 (MQ=255)

                                                      cAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgtg                                       >  1:1922177/1‑91 (MQ=255)

                                                       aataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgtgt                                      >  1:3475102/1‑91 (MQ=255)

                                                       aataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGgtgt                                      <  1:195277/91‑1 (MQ=255)

                                                        ataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGtt                                     >  1:2559070/1‑91 (MQ=255)

                                                        ataataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGtt                                     >  1:2656483/1‑91 (MQ=255)

                                                         taataataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGttt                                    >  1:2528122/1‑91 (MQ=255)

                                                         taataataataacaataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGttt                                    >  1:3205510/1‑91 (MQ=255)

                                                             aataataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTttat                                <  1:119560/91‑1 (MQ=255)

                                                               taataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTttatta                              <  1:869779/91‑1 (MQ=255)

                                                               taataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTttatta                              <  1:869559/91‑1 (MQ=255)

                                                                aataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTaa                             >  1:2194489/1‑91 (MQ=255)

                                                                 ataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAg                            <  1:4133413/91‑1 (MQ=255)

                                                                 ataataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAg                            <  1:1275750/91‑1 (MQ=255)

                                                                   aataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                          <  1:1885918/91‑1 (MQ=255)

                                                                   aataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                          >  1:679749/1‑91 (MQ=255)

                                                                   aataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                          <  1:1783437/91‑1 (MQ=255)

                                                                    atagtaatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                         <  1:3736751/91‑1 (MQ=255)

                                                                    ataataatCGAATTCAACAAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGtt                          <  1:727836/91‑1 (MQ=255)

                                                                    ataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                         <  1:1736813/91‑1 (MQ=255)

                                                                    ataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                         <  1:1736707/91‑1 (MQ=255)

                                                                    ataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                         <  1:821021/91‑1 (MQ=255)

                                                                    ataataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTc                         <  1:1306973/91‑1 (MQ=255)

                                                                     taataatCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTcc                        <  1:3803386/91‑1 (MQ=255)

                                                                           tCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGtttt                  >  1:4094269/1‑91 (MQ=255)

                                                                               aTTGAAC‑AAGAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAgg              <  1:3731665/91‑1 (MQ=255)

                                                                               aTTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAgg              >  1:3881730/1‑91 (MQ=255)

                                                                                ttCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAggg             <  1:2948217/91‑1 (MQ=255)

                                                                                   aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc          <  1:1851550/91‑1 (MQ=255)

                                                                                   aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc          <  1:1852796/91‑1 (MQ=255)

                                                                                   aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc          >  1:2725961/1‑91 (MQ=255)

                                                                                   aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc          >  1:2723241/1‑91 (MQ=255)

                                                                                   aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc          >  1:2723030/1‑91 (MQ=255)

                                                                                   aac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc          <  1:754951/91‑1 (MQ=255)

                                                                                    ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa         >  1:3010514/1‑91 (MQ=255)

                                                                                    ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa         <  1:1355317/91‑1 (MQ=255)

                                                                                    ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa         >  1:2112142/1‑91 (MQ=255)

                                                                                    ac‑aaAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCa         >  1:864664/1‑91 (MQ=255)

                                                                                       aaaaaCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGt       >  1:3902053/1‑91 (MQ=255)

                                                                                       aaaaaCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGt       <  1:2570237/91‑1 (MQ=255)

                                                                                           aCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGccc   <  1:1038811/91‑1 (MQ=255)

                                                                                           aCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGccc   <  1:1502539/91‑1 (MQ=255)

                                                                                            CTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCt  >  1:780943‑M1/1‑91 (MQ=255)

                                                                                            CTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCt  >  1:1254605‑M1/1‑91 (MQ=255)

                                                                                            CTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCt  >  1:2305019‑M1/1‑91 (MQ=255)

                                                                                            CTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCt  >  1:1958678‑M1/1‑91 (MQ=255)

GCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAAC‑AAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCT  >  USA300TCH1516_ALE/68601‑68782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.