| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 127978 | 80 (0.810) | 20 (0.230) | 14/144 | NT | 20.3% | intergenic (+198/+131) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
| ? | USA300TCH1516_ALE | = 128000 | 85 (0.960) | intergenic (+220/+109) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A | |||||
TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/127881‑127978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgca‑c‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT < USA300TCH1516_ALE/128000‑127912 TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAA > 1:2176287/1‑91TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAA > 1:2175522/1‑91 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:2810402/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:2810280/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:3243591/91‑1 TTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA < 1:4039583/91‑1 TTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAAT < 1:897961/91‑1 TTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAAT < 1:2184241/91‑1 TTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATG > 1:2517549/1‑91 TTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATG > 1:1957472/1‑91 TAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGC < 1:3121163/91‑1 TAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGC > 1:3374195/1‑91 TAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGC > 1:1830338/1‑91 AATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA < 1:528435/91‑1 AATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA < 1:136764/91‑1 ATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C > 1:79144/1‑91 CATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTT < 1:535565/91‑1 CATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTT < 1:535397/91‑1 ATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACC‑GAGCAAC‑‑ATCTTTT < 1:1538853/91‑1 ATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTG < 1:749969/91‑1 ATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTG < 1:2132622/91‑1 ATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTG < 1:2132485/91‑1 ATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTG < 1:3010993/91‑1 ATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTT < 1:2483387/91‑1 ATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGC < 1:4146539/91‑1 ATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGC < 1:2830838/91‑1 TAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCA < 1:4111314/91‑1 AATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAG < 1:1509132/91‑1 AGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACC‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGC < 1:364899/91‑1 AGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCA < 1:2421446/91‑1 AGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTT < 1:870058/91‑1 GAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTT < 1:458519/91‑1 AAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTA < 1:1513503/91‑1 GCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACT < 1:2061993/91‑1 AAGTAAAATAAAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTC < 1:3360786/91‑1 GTAAAATAAAAAATGCA‑CTGAGCAACAAAAGTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCT < 1:2656683/91‑1 AAAAATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCT > 1:3995502/1‑91 AATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 1:3598717/91‑1 AATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACT < 1:3453078/91‑1 ATGCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTC < 1:2740886/91‑1 GCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTG > 1:4096374/1‑91 GCA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTG > 1:2001447/1‑91 CA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGA < 1:3254429/91‑1 CA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGA > 1:262979/1‑91 CA‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGA < 1:1588567/91‑1 A‑C‑GAGCAAC‑‑TTCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTTCTTTACTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT < 1:2585122/91‑1 A‑C‑GAGCAAC‑‑CTCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT > 1:2082896/1‑91 A‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT < 1:2435989/91‑1 A‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT > 1:3131011/1‑91 A‑C‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACGTTCTACTCTGAT < 1:3203156/91‑1 TTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCA‑C‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/127881‑127978‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatgca‑c‑GAGCAAC‑‑ATCTTTTGTTGCTCAGTGCATTTTTTATTTTACTTACTTTTCTAAACAACTTCTGAAACGCCTCAACACTTTCTACTCTGAT < USA300TCH1516_ALE/128000‑127912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |