BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 127978	80 (0.810)	20 (0.230)	14/144	NT	20.3%	intergenic (+198/+131)	lctP_1/spa	L‑lactate permease/Immunoglobulin G‑binding protein A
*	?	USA300TCH1516_ALE	= 128000	85 (0.960)	20 (0.230)	14/144	NT	20.3%	intergenic (+220/+109)	lctP_1/spa	L‑lactate permease/Immunoglobulin G‑binding protein A

Only 100 of 126 total aligned reads displayed.

ATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGATATCTA  >  USA300TCH1516_ALE/127912‑128088

aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgt                                                                                        <  1:2435989‑M2/91‑3 (MQ=255)

aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgt                                                                                        >  1:3131011‑M2/1‑89 (MQ=255)

aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAGGTTGCTCgt                                                                                        >  1:2082896‑M2/1‑89 (MQ=255)

 tCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtg                                                                                       >  1:262979‑M2/1‑88 (MQ=255)

 tCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtg                                                                                       <  1:3254429‑M2/91‑4 (MQ=255)

  cAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgc                                                                                      >  1:4096374‑M2/1‑87 (MQ=255)

    gagTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcat                                                                                    <  1:2740886‑M2/91‑7 (MQ=255)

     agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcatt                                                                                   <  1:3598717‑M2/91‑8 (MQ=255)

       tAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTa                                                                                 >  1:2655781/1‑91 (MQ=255)

        aGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAg                                                                                <  1:4017854/91‑1 (MQ=255)

         gAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAga                                                                               <  1:1372661/91‑1 (MQ=255)

            aGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatga                                                                            <  1:2210333/91‑1 (MQ=255)

             gtgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAgatgat                                                                           >  1:3122782/1‑91 (MQ=255)

              tgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGAtt                                                                          <  1:3480243/91‑1 (MQ=255)

                ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCt                                                                        <  1:1558174/91‑1 (MQ=255)

                ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCt                                                                        <  1:2492531/91‑1 (MQ=255)

                ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCt                                                                        <  1:2515620/91‑1 (MQ=255)

                  gAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcattttttattttactt                                                                      <  1:3360786‑M2/91‑21 (MQ=255)

                  gAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTa                                                                      >  1:146103/1‑91 (MQ=255)

                  gAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTa                                                                      <  1:4062586/91‑1 (MQ=255)

                  gAGGCGTTTCAGAAGTTGTTTAGAAAAGAAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTa                                                                      <  1:4062552/91‑1 (MQ=255)

                   aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAt                                                                     >  1:3709126/1‑91 (MQ=255)

                   aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTAt                                                                     >  1:3275540/1‑91 (MQ=255)

                      cGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCAt                                                                  >  1:658862/1‑91 (MQ=255)

                       gTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAATATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCAtt                                                                 >  1:3504119/1‑91 (MQ=255)

                       gTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCAtt                                                                 <  1:2500260/91‑1 (MQ=255)

                         ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTc                                                               >  1:2641736/1‑91 (MQ=255)

                         ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTc                                                               >  1:1732061/1‑91 (MQ=255)

                         ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTc                                                               >  1:1731817/1‑91 (MQ=255)

                             gAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAAt                                                           <  1:2104434/91‑1 (MQ=255)

                              aaGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATa                                                          <  1:2566601/91‑1 (MQ=255)

                               aGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATaa                                                         >  1:3029678/1‑91 (MQ=255)

                                   gttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAt                                                     <  1:738296/91‑1 (MQ=255)

                                    tttAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtg                                                    <  1:3765177/91‑1 (MQ=255)

                                     ttAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgt                                                   <  1:2732206/91‑1 (MQ=255)

                                     ttAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgt                                                   <  1:2732247/91‑1 (MQ=255)

                                      tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                                                  <  1:3495077/91‑1 (MQ=255)

                                      tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                                                  <  1:1968723/91‑1 (MQ=255)

                                      tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                                                  <  1:1968644/91‑1 (MQ=255)

                                      tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                                                  <  1:3753341/91‑1 (MQ=255)

                                      tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg                                                  <  1:3753687/91‑1 (MQ=255)

                                       aGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATgtgt                                                 <  1:836835/91‑1 (MQ=255)

                                       aGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATgtgt                                                 <  1:730251/91‑1 (MQ=255)

                                       aGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATgtgt                                                 <  1:1538734/91‑1 (MQ=255)

                                       aGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATgtgt                                                 <  1:4040812/91‑1 (MQ=255)

                                          aaaGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTaa                                              <  1:1495064/91‑1 (MQ=255)

                                            agtaagtaAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgc                                            <  1:2061993‑M2/91‑47 (MQ=255)

                                              taagtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCaa                                          <  1:28479/91‑1 (MQ=255)

                                                agtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACg                                        >  1:35923/1‑91 (MQ=255)

                                                 gtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGt                                       <  1:2682486/91‑1 (MQ=255)

                                                 gtaaAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGt                                       >  1:2591827/1‑91 (MQ=255)

                                                  taaaataaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGta                                      >  1:2444885/1‑91 (MQ=255)

                                                    aaataaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGtata                                    >  1:815148/1‑91 (MQ=255)

                                                     aataaaaAATGCAGTGAGCAACAAAAGATGTTGCTCGTGCATTGAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGtatat                                   <  1:4143692/91‑1 (MQ=255)

                                                     aataaaaAATGCAGTGAGCAACAAAAGATGTTGCTCGTGCATTGAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGtatat                                   <  1:4143464/91‑1 (MQ=255)

                                                      ataaaaAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGtatata                                  >  1:1993602/1‑91 (MQ=255)

                                                       taaaaAATGCACTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacacttt                                 <  1:1513503‑M2/91‑58 (MQ=255)

                                                        aaaaaaTGCACTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttc                                <  1:458519‑M2/91‑59 (MQ=255)

                                                        aaaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAg                                >  1:887533/1‑91 (MQ=255)

                                                         aaaaaTGCACTGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttct                               <  1:870058‑M2/91‑60 (MQ=255)

                                                         aaaaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt                               >  1:2076524/1‑91 (MQ=255)

                                                           aaaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTa                             >  1:2781408/1‑91 (MQ=255)

                                                            aaTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa                            <  1:3407890/91‑1 (MQ=255)

                                                             aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa                           >  1:3324813/1‑91 (MQ=255)

                                                             aTGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa                           >  1:1312179/1‑91 (MQ=255)

                                                               gCAGTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt                         <  1:3734927/91‑1 (MQ=255)

                                                               gCACTGAGCAACAAAAGATGTTGCTCggtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactct                         <  1:364899‑M2/91‑66 (MQ=255)

                                                               gCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt                         <  1:1446836/91‑1 (MQ=255)

                                                               gCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt                         <  1:2856954/91‑1 (MQ=255)

                                                               gCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt                         <  1:1392797/91‑1 (MQ=255)

                                                               gCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt                         >  1:3957383/1‑91 (MQ=255)

                                                                 aCTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAGTTg                       >  1:3265187/1‑91 (MQ=255)

                                                                 aCTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTg                       >  1:2989153/1‑91 (MQ=255)

                                                                   tGAGCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgatta                     <  1:4111314‑M2/91‑70 (MQ=255)

                                                                   tGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGt                     <  1:1738584/91‑1 (MQ=255)

                                                                   tGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGt                     >  1:837518/1‑91 (MQ=255)

                                                                    gAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGtt                    <  1:2584033/91‑1 (MQ=255)

                                                                     aGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGttt                   <  1:955725/91‑1 (MQ=255)

                                                                     aGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGttt                   <  1:954862/91‑1 (MQ=255)

                                                                      gCAACAAAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacat                  <  1:2830838‑M2/91‑73 (MQ=255)

                                                                      gCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTCATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTg                  >  1:3500599/1‑91 (MQ=255)

                                                                       caacaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTgg                 <  1:3444535/91‑1 (MQ=255)

                                                                        aacaaAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatat                <  1:2483387‑M2/91‑75 (MQ=255)

                                                                         acaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGAt               >  1:1043194/1‑91 (MQ=255)

                                                                         acaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGAt               >  1:1876477/1‑91 (MQ=255)

                                                                         acaaAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGAt               >  1:3183870/1‑91 (MQ=255)

                                                                          caaAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatat              <  1:3010993‑M2/91‑77 (MQ=255)

                                                                          caaAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatat              <  1:2132622‑M2/91‑77 (MQ=255)

                                                                          caaAAGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatat              <  1:2132485‑M2/91‑77 (MQ=255)

                                                                           aaaaGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatg             <  1:535397‑M2/91‑78 (MQ=255)

                                                                           aaaaGATGTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatg             <  1:535565‑M2/91‑78 (MQ=255)

                                                                           aaaaGATGTTGCTCggtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatat             <  1:1538853‑M2/91‑78 (MQ=255)

                                                                            aaaGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATaaa            >  1:57022/1‑91 (MQ=255)

                                                                              aGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAAt          <  1:3258972/91‑1 (MQ=255)

                                                                              aGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAAt          >  1:378863/1‑91 (MQ=255)

                                                                               gATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATg         >  1:668472/1‑91 (MQ=255)

                                                                                  gTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGata      <  1:16339/91‑1 (MQ=255)

                                                                                    tGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGAtatc    <  1:121460/91‑1 (MQ=255)

                                                                                      cTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGCATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGAtatcta  >  1:3485620/1‑91 (MQ=255)

                                                                                      cTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGAtatcta  <  1:3153533/91‑1 (MQ=255)

ATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGATGTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGGTTTGGATAAAATGATATCTA  >  USA300TCH1516_ALE/127912‑128088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.