| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 127978 | 80 (0.810) | 20 (0.230) | 14/144 | NT | 20.3% | intergenic (+198/+131) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
| ? | USA300TCH1516_ALE | = 128000 | 85 (0.960) | intergenic (+220/+109) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A | |||||
Only 100 of 150 total aligned reads displayed.
ATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGG > USA300TCH1516_ALE/127888‑128068 | aTGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCAC > 1:79144‑M1/1‑91 (MQ=255) tGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACt > 1:3669832/1‑91 (MQ=255) tGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACt > 1:2825264/1‑91 (MQ=255) cTAAAAATGTCATATATCTAATCAGAGTAGAACGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAg < 1:3551061/91‑1 (MQ=255) aaaTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGcaac > 1:2532544/1‑91 (MQ=255) aTGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGcaacaa < 1:3209224/91‑1 (MQ=255) aTGTCATATATGTAAAAAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAATGTGAGTAAAATAAAAAATGCACTGAGcaacaa < 1:1245820/91‑1 (MQ=255) gTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACaaaa > 1:1419901/1‑91 (MQ=255) gTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACaaaa > 1:788035/1‑91 (MQ=255) cATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatctttt < 1:535565‑M1/91‑15 (MQ=255) cATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatctttt < 1:535397‑M1/91‑15 (MQ=255) cATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGa < 1:2580589/91‑1 (MQ=255) cATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGa < 1:69187/91‑1 (MQ=255) cATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGa < 1:1111105/91‑1 (MQ=255) atatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttg < 1:2132622‑M1/91‑16 (MQ=255) atatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttg < 1:2132485‑M1/91‑16 (MQ=255) atatatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttg < 1:749969‑M1/91‑16 (MQ=255) atatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑Gt < 1:1326460/91‑1 (MQ=255) atatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑Gt < 1:1547614/91‑1 (MQ=255) atatGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑Gt < 1:1547196/91‑1 (MQ=255) atGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgc < 1:4146539‑M1/91‑20 (MQ=255) gTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCt < 1:2751096/91‑1 (MQ=255) tAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctca < 1:4111314‑M1/91‑23 (MQ=255) aaTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctcag < 1:1509132‑M1/91‑24 (MQ=255) aTCAGAGTAGAACGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgt < 1:3203156‑M2/91‑3 (MQ=255) aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgt > 1:3131011‑M2/1‑89 (MQ=255) aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgt < 1:2435989‑M2/91‑3 (MQ=255) aTCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAG‑‑GTTGCTCgt > 1:2082896‑M2/1‑89 (MQ=255) tCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtg < 1:3254429‑M2/91‑4 (MQ=255) tCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtg < 1:1588567‑M2/91‑4 (MQ=255) cAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtgc > 1:2001447‑M2/1‑87 (MQ=255) agagTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctcagtgca < 1:2421446‑M1/91‑28 (MQ=255) agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtgcatt < 1:3598717‑M2/91‑8 (MQ=255) agTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtgcatt < 1:3453078‑M2/91‑8 (MQ=255) tAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTa > 1:2655781/1‑91 (MQ=255) aGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctcagtgcattttt < 1:870058‑M1/91‑33 (MQ=255) aGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtgcattttt > 1:3995502‑M2/1‑81 (MQ=255) gAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACgagcaacatcttttgttgctcagtgcatttttt < 1:458519‑M1/91‑34 (MQ=255) gAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAga < 1:1372661/91‑1 (MQ=255) tgtTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGAtt < 1:3480243/91‑1 (MQ=255) ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCt < 1:2515620/91‑1 (MQ=255) ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCt < 1:2492758/91‑1 (MQ=255) ttGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCt < 1:2492531/91‑1 (MQ=255) gAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtgcattttttattttactt < 1:3360786‑M2/91‑21 (MQ=255) gAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTa < 1:4062586/91‑1 (MQ=255) gAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTa > 1:146103/1‑91 (MQ=255) gAGGCGTTTCAGAAGTTGTTTAGAAAAGAAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTa < 1:4062552/91‑1 (MQ=255) aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTAt > 1:3275540/1‑91 (MQ=255) aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTAt > 1:3709126/1‑91 (MQ=255) aGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAACTTTTGTTGCTCagtgcattttttattttac < 1:2656683‑M2/91‑20 (MQ=255) cGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCAt > 1:658862/1‑91 (MQ=255) gTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAATATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCAtt > 1:3504119/1‑91 (MQ=255) ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTc > 1:1731817/1‑91 (MQ=255) ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTc > 1:1732061/1‑91 (MQ=255) ttCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTc > 1:2641736/1‑91 (MQ=255) aGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATaa > 1:3029678/1‑91 (MQ=255) ttgttTAGAAAAGTAAGTAAAATAAAAAATGCGCTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGa < 1:875800/91‑1 (MQ=255) gttTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAt < 1:738296/91‑1 (MQ=255) tttAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtg < 1:3765177/91‑1 (MQ=255) ttAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgt < 1:2732247/91‑1 (MQ=255) tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg < 1:1968723/91‑1 (MQ=255) tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg < 1:1968644/91‑1 (MQ=255) tAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAAtgtg < 1:3753687/91‑1 (MQ=255) aGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATgtgt < 1:1538734/91‑1 (MQ=255) aGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATgtgt < 1:836835/91‑1 (MQ=255) aGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATgtgt < 1:4040812/91‑1 (MQ=255) agtaagtaAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgc < 1:2061993‑M2/91‑47 (MQ=255) taagtaaAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCaa < 1:28479/91‑1 (MQ=255) aagtaaAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAAc < 1:2746776/91‑1 (MQ=255) gtaaAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGt > 1:2591827/1‑91 (MQ=255) gtaaAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGt < 1:2682486/91‑1 (MQ=255) taaaataaaaAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGta > 1:2444885/1‑91 (MQ=255) aataaaaAATGCAGTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTGAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGtatat < 1:4143464/91‑1 (MQ=255) taaaaAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacacttt < 1:1513503‑M2/91‑58 (MQ=255) aaaaaaTGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAg > 1:887533/1‑91 (MQ=255) aaaaaTGCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttct > 1:3995502‑M1/1‑10 (MQ=255) aaaaaTGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGt > 1:2076524/1‑91 (MQ=255) aaaTGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTa > 1:2781408/1‑91 (MQ=255) aaTGCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctact < 1:3598717‑M1/91‑85 (MQ=255) aaTGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaa < 1:3407890/91‑1 (MQ=255) aTGCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactc < 1:2740886‑M1/91‑86 (MQ=255) aTGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTaaa > 1:3324813/1‑91 (MQ=255) tGCACTGAGCAACAAAAGAT‑‑GTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactct < 1:2421446‑M2/91‑65 (MQ=255) gCAGTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt < 1:3734927/91‑1 (MQ=255) gCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctg > 1:4096374‑M1/1‑4 (MQ=255) gCACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctg > 1:2001447‑M1/1‑4 (MQ=255) gCACTGAGCAACAAAAGAT‑‑GTTGCTCggtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactct < 1:364899‑M2/91‑66 (MQ=255) gCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt < 1:2856954/91‑1 (MQ=255) gCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt < 1:1446836/91‑1 (MQ=255) gCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAt < 1:1392797/91‑1 (MQ=255) cACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctga < 1:1588567‑M1/91‑89 (MQ=255) cACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctga < 1:3254429‑M1/91‑89 (MQ=255) cACgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctga > 1:262979‑M1/1‑3 (MQ=255) cACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAAtt > 1:3066739/1‑91 (MQ=255) aCgagcaacttcttttgttgctcagtgcattttttattttactttctttactaaacaacttctgaaacgcctcaacactttctactctgat < 1:2585122‑M1/91‑90 (MQ=255) aCgagcaacctcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgat > 1:2082896‑M1/1‑2 (MQ=255) aCgagcaacatcttttgttgctcagtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgat > 1:3131011‑M1/1‑2 (MQ=255) aCTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTg > 1:2950190/1‑91 (MQ=255) aCTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTg > 1:2989153/1‑91 (MQ=255) cTGAGCAACAAAAGAT‑‑GTTGCTCgtgcattttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgatt < 1:1509132‑M2/91‑69 (MQ=255) | ATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAATGCACTGAGCAACAAAAGAT‑‑GTTGCTCGTGCATTTAGATGATTCTTATCATTTCAAATAAGAATGTGTTAATCAACGTATATAAGTTAAAATTGG > USA300TCH1516_ALE/127888‑128068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |