| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 153874 | 111 (1.130) | 6 (0.070) | 5/150 | NT | 5.4% | intergenic (+46/‑222) | rfbX/sodM | Putative O‑antigen transporter/Superoxide dismutase [Mn/Fe] 2 |
| ? | USA300TCH1516_ALE | = 153903 | 106 (1.150) | intergenic (+75/‑193) | rfbX/sodM | Putative O‑antigen transporter/Superoxide dismutase [Mn/Fe] 2 | |||||
TCAATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/153780‑153874‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagACAACTTCCATTTTTCAATAAGAAATTGCCTTTTCTTCTTAATCTTAATTTTCTAAAGTATAGCATTACCGGTACTTAAATTGTTT < USA300TCH1516_ALE/153903‑153818 TCAATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGA > 1:2709985/1‑91TCAATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGA > 1:3981343/1‑91 AATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAA > 1:2668908/1‑91 ATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAA < 1:233033/91‑1 ATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAA < 1:50718/91‑1 ATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAA < 1:51095/91‑1 ATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAA > 1:586703/1‑91 ACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGACAACTTCCATTTTTCAATAAGAAATTGC < 1:2438908/91‑1 ACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGACAACTTCCATTTTTCAATAAGAAATTGC < 1:2443621/91‑1 CATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGACAACTTCCATTTTTCAATAAGAAATTGCC < 1:359744/91‑1 AACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGACAACTTCCATTTTTCAATAAGAAATTGCCTTTTC < 1:1012801/91‑1 ATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGACAACTTCCATTTTTCAATAAGAAATTGCCTTTTCTTCT < 1:1196284/91‑1 AGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGACAACTTCCATTTTTCAATAAGAAATTGCCTTTTCTTCTTAATC < 1:1973197/91‑1 AAAAGACAACTTCCATTTTTCAATAAGAAATTGCCTTTTCTTCTTAATCTTAATTTTCTAAAGTATAGCATTACCGGTACTTAAATTGTTT > 1:1156650/1‑91 AAAAGACAACTTCCATTTTTCAATAAGAAATTGCCTTTTCTTCTTAATCTTAATTTTCTAAAGTATAGCATTACCGGTACTTAAATTGTTT < 1:1171005/91‑1 AAAAGACAACTTCCATTTTTCAATAAGAAATTGCCTTTTCTTCTTAATCTTAATTTTCTAAAGTATAGCATTACCGGTACTTAAATTGTTT < 1:529435/91‑1 TCAATACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/153780‑153874‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagACAACTTCCATTTTTCAATAAGAAATTGCCTTTTCTTCTTAATCTTAATTTTCTAAAGTATAGCATTACCGGTACTTAAATTGTTT < USA300TCH1516_ALE/153903‑153818 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |