BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 153874	111 (1.130)	6 (0.070)	5/150	NT	5.4%	intergenic (+46/‑222)	rfbX/sodM	Putative O‑antigen transporter/Superoxide dismutase [Mn/Fe] 2
*	?	USA300TCH1516_ALE	= 153903	106 (1.150)	6 (0.070)	5/150	NT	5.4%	intergenic (+75/‑193)	rfbX/sodM	Putative O‑antigen transporter/Superoxide dismutase [Mn/Fe] 2

Only 100 of 140 total aligned reads displayed.

ACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAATATTT  >  USA300TCH1516_ALE/153813‑153993

aCATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGt                                                                                            >  1:3145121/1‑91 (MQ=255)

     aaaCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTctttt                                                                                       <  1:529435‑M2/91‑6 (MQ=255)

     aaaCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTctttt                                                                                       >  1:1156650‑M2/1‑86 (MQ=255)

     aaaCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTctttt                                                                                       <  1:1171005‑M2/91‑6 (MQ=255)

      aaCAATTTAAGTACCCGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCCATTTCTTATTGAAAAATGGAAGTTGTCttttt                                                                                      >  1:3536146/1‑91 (MQ=255)

       aCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCtttttt                                                                                     >  1:4135130/1‑91 (MQ=255)

       aCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCtttttt                                                                                     <  1:2143248/91‑1 (MQ=255)

        cAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTa                                                                                    >  1:1009795/1‑91 (MQ=255)

        cAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTa                                                                                    >  1:2453057/1‑91 (MQ=255)

        cAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTa                                                                                    >  1:2088755/1‑91 (MQ=255)

        cAATTTAAGCACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTa                                                                                    >  1:2088567/1‑91 (MQ=255)

         aaTTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTaa                                                                                   >  1:1804084/1‑91 (MQ=255)

         aaTTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTaa                                                                                   >  1:2259898/1‑91 (MQ=255)

          aTTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAAt                                                                                  >  1:1206163/1‑91 (MQ=255)

          aTTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAAt                                                                                  <  1:2385763/91‑1 (MQ=255)

           tttAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAAtt                                                                                 <  1:805288/91‑1 (MQ=255)

             tAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATtct                                                                               >  1:3177734/1‑91 (MQ=255)

              aaGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATtctc                                                                              >  1:2865890/1‑91 (MQ=255)

              aaGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATtctc                                                                              >  1:440520/1‑91 (MQ=255)

               aGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTctct                                                                             >  1:1992783/1‑91 (MQ=255)

               aGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTctct                                                                             <  1:1769644/91‑1 (MQ=255)

                gTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCtt                                                                            >  1:2159153/1‑91 (MQ=255)

                gTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCtt                                                                            >  1:2158838/1‑91 (MQ=255)

                  aCCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                                                          >  1:1978110/1‑91 (MQ=255)

                  aCCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                                                          <  1:220487/91‑1 (MQ=255)

                  aCCGGTAATGCTATACTTTAGAAAAGTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                                                          <  1:1540739/91‑1 (MQ=255)

                   ccGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTaa                                                                         >  1:2845801/1‑91 (MQ=255)

                     ggTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTaaaa                                                                       >  1:3956145/1‑91 (MQ=255)

                        aaTGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCg                                                                    <  1:2699447/91‑1 (MQ=255)

                         aTGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCgg                                                                   <  1:129704/91‑1 (MQ=255)

                          tGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCggg                                                                  <  1:3259866/91‑1 (MQ=255)

                          tGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCggg                                                                  >  1:1006000/1‑91 (MQ=255)

                            cTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGaa                                                                >  1:1411965/1‑91 (MQ=255)

                               taCTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACa                                                             <  1:1600402/91‑1 (MQ=255)

                               taCTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACa                                                             <  1:1589183/91‑1 (MQ=255)

                               taCTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACa                                                             <  1:3929883/91‑1 (MQ=255)

                                 cTTTAGAAAATTAAGATTAAGAAGATAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACaaa                                                           <  1:3858856/91‑1 (MQ=255)

                                  tttAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACaaaa                                                          <  1:1117925/91‑1 (MQ=255)

                                  tttAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACaaaa                                                          >  1:379540/1‑91 (MQ=255)

                                   ttAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAg                                                         <  1:2915583/91‑1 (MQ=255)

                                   ttAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAg                                                         <  1:4083718/91‑1 (MQ=255)

                                    tAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGc                                                        >  1:2658515/1‑91 (MQ=255)

                                     aGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCa                                                       <  1:36244/91‑1 (MQ=255)

                                     aGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCa                                                       >  1:1015540/1‑91 (MQ=255)

                                     aGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCa                                                       <  1:1756462/91‑1 (MQ=255)

                                     aGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCa                                                       >  1:1287805/1‑91 (MQ=255)

                                         aaTTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTa                                                   <  1:2001185/91‑1 (MQ=255)

                                           ttatgattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTaaa                                                 <  1:3265951/91‑1 (MQ=255)

                                           ttaagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTaaa                                                 >  1:886052/1‑91 (MQ=255)

                                           ttaagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTaaa                                                 >  1:4029701/1‑91 (MQ=255)

                                            taagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAAt                                                <  1:3910654/91‑1 (MQ=255)

                                            taagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAAt                                                <  1:1897084/91‑1 (MQ=255)

                                             aagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATg                                               >  1:757311/1‑91 (MQ=255)

                                             aagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATg                                               >  1:1983766/1‑91 (MQ=255)

                                              agattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGc                                              <  1:2808086/91‑1 (MQ=255)

                                               gattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTcttttcttcttaatcttaattttctaaagtatagcattaccggtact                                             <  1:1973197‑M2/91‑48 (MQ=255)

                                               gattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGcc                                             >  1:248611/1‑91 (MQ=255)

                                                attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt                                            >  1:3597473/1‑91 (MQ=255)

                                                attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt                                            <  1:3749399/91‑1 (MQ=255)

                                                attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt                                            <  1:3090342/91‑1 (MQ=255)

                                                attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt                                            >  1:2904898/1‑91 (MQ=255)

                                                attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt                                            >  1:254315/1‑91 (MQ=255)

                                                 ttaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCtt                                           <  1:1853540/91‑1 (MQ=255)

                                                 ttaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCtt                                           <  1:1644539/91‑1 (MQ=255)

                                                    agaagaAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTcttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaat                                        <  1:1196284‑M2/91‑53 (MQ=255)

                                                    agaagaAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCttttt                                        <  1:1743430/91‑1 (MQ=255)

                                                    agaagaAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCttttt                                        <  1:1950580/91‑1 (MQ=255)

                                                     gaagaaAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTg                                       <  1:3696283/91‑1 (MQ=255)

                                                        gaaAAGGCAATTTCTTATTGAAAAATGGAAGTTGTcttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaattgtt                                    <  1:1012801‑M2/91‑57 (MQ=255)

                                                        gaaAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCAt                                    <  1:2585789/91‑1 (MQ=255)

                                                          aaaGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTc                                  <  1:4092453/91‑1 (MQ=255)

                                                            aGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCaa                                >  1:345154/1‑91 (MQ=255)

                                                              gCAATTTCTTATTGAAAAATGGAAGTTGTcttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaattgttttatgt                              <  1:2438908‑M2/91‑63 (MQ=255)

                                                              gCAATTTCTTATTGAAAAATGGAAGTTGTcttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaattgttttatgt                              <  1:2443621‑M2/91‑63 (MQ=255)

                                                              gCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCaata                              <  1:538464/91‑1 (MQ=255)

                                                              gCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCaata                              >  1:350956/1‑91 (MQ=255)

                                                                 aTTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCaatatta                           >  1:4017877/1‑91 (MQ=255)

                                                                   ttCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCaatattaaa                         <  1:1675200/91‑1 (MQ=255)

                                                                    tCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCaatattaaat                        <  1:1071661/91‑1 (MQ=255)

                                                                        aTTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCaatattaaatatta                    >  1:30479/1‑91 (MQ=255)

                                                                         ttGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCaatattaaatattaa                   >  1:1559822/1‑90 (MQ=255)

                                                                         ttGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAAtattat                   >  1:1585053/1‑91 (MQ=255)

                                                                           gAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTatat                 <  1:3666789/91‑1 (MQ=255)

                                                                             aaaaTGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCa               >  1:1948273/1‑91 (MQ=255)

                                                                              aaaTGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCaa              <  1:2597357/91‑1 (MQ=255)

                                                                                aTGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAAtt            >  1:273043/1‑91 (MQ=255)

                                                                                  ggAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTc          <  1:1314095/91‑1 (MQ=255)

                                                                                  ggAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTc          >  1:3621851/1‑91 (MQ=255)

                                                                                    aaGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGa        >  1:3519921/1‑91 (MQ=255)

                                                                                     aGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGaa       >  1:1454402/1‑91 (MQ=255)

                                                                                     aGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGaa       >  1:1453880/1‑91 (MQ=255)

                                                                                     aGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGaa       >  1:1436816/1‑91 (MQ=255)

                                                                                       ttGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAata     >  1:3766624/1‑91 (MQ=255)

                                                                                       ttGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAata     <  1:2262771/91‑1 (MQ=255)

                                                                                       ttGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAata     >  1:1476925/1‑91 (MQ=255)

                                                                                        tGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATGAATTTCGAatat    <  1:3205867/91‑1 (MQ=255)

                                                                                         gTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAATAtt   <  1:726796/91‑1 (MQ=255)

                                                                                         gTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAATAtt   <  1:727314/91‑1 (MQ=255)

                                                                                         gTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAATAtt   <  1:2208949/91‑1 (MQ=255)

                                                                                         gTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAATAtt   <  1:3405345/91‑1 (MQ=255)

ACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAATATTAAATATTATATCAATTTCGAATATTT  >  USA300TCH1516_ALE/153813‑153993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.