BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 153874	111 (1.130)	6 (0.070)	5/150	NT	5.4%	intergenic (+46/‑222)	rfbX/sodM	Putative O‑antigen transporter/Superoxide dismutase [Mn/Fe] 2
*	?	USA300TCH1516_ALE	= 153903	106 (1.150)	6 (0.070)	5/150	NT	5.4%	intergenic (+75/‑193)	rfbX/sodM	Putative O‑antigen transporter/Superoxide dismutase [Mn/Fe] 2

Only 100 of 139 total aligned reads displayed.

ACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAAT  >  USA300TCH1516_ALE/153785‑153964

aCGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGTAAATTAAGATTAAGAAGAAAAgg                                                                                           >  1:1037455/1‑91 (MQ=255)

 cGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGc                                                                                          <  1:929111/91‑1 (MQ=255)

 cGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGc                                                                                          <  1:1631818/91‑1 (MQ=255)

   tATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCaa                                                                                        >  1:299051/1‑91 (MQ=255)

   tATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCaa                                                                                        >  1:3617388/1‑91 (MQ=255)

      ggCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAAttt                                                                                     >  1:271780/1‑91 (MQ=255)

      ggCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAAttt                                                                                     >  1:3245526/1‑91 (MQ=255)

       gCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTc                                                                                    >  1:2879931/1‑91 (MQ=255)

       gCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTc                                                                                    >  1:1765030/1‑91 (MQ=255)

         aaaTATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCtt                                                                                  >  1:2283795/1‑91 (MQ=255)

           atatTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTAt                                                                                >  1:3272439/1‑91 (MQ=255)

            tatTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTAtt                                                                               <  1:1352724/91‑1 (MQ=255)

            tatTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTAtt                                                                               <  1:1352631/91‑1 (MQ=255)

            tatTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTAtt                                                                               >  1:428230/1‑91 (MQ=255)

             atTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTg                                                                              <  1:3705426/91‑1 (MQ=255)

               tGAGGTATCTTCGACATAAAACAATGTAAGTACCGGTAAGGCTATACTTTAGATAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGaa                                                                            <  1:3861583/91‑1 (MQ=255)

                gAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGaaa                                                                           >  1:1260048/1‑91 (MQ=255)

                gAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGaaa                                                                           >  1:1259956/1‑91 (MQ=255)

                gAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTCTAGAAAATTAAGATTAAGAAGAAAAGGCAGTTTCTTATTGaaa                                                                           >  1:4152980/1‑91 (MQ=255)

                 aGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGaaaa                                                                          <  1:3654771/91‑1 (MQ=255)

                  ggCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGaaaaa                                                                         >  1:898909/1‑91 (MQ=255)

                  ggCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGaaaaa                                                                         >  1:808929/1‑91 (MQ=255)

                      tCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGa                                                                     >  1:3375728/1‑91 (MQ=255)

                      tCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGa                                                                     >  1:1784892/1‑91 (MQ=255)

                        ttCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAg                                                                   >  1:3561661/1‑91 (MQ=255)

                          cGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGtt                                                                 >  1:770300/1‑91 (MQ=255)

                            aCATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGacaacttccatttttcaataagaaattgc                                                               <  1:2443621‑M1/91‑30 (MQ=255)

                            aCATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGt                                                               >  1:3145121/1‑91 (MQ=255)

                                 aaaCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTctttt                                                          <  1:529435‑M2/91‑6 (MQ=255)

                                 aaaCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTctttt                                                          <  1:1171005‑M2/91‑6 (MQ=255)

                                  aaCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGacaacttccatttttcaataagaaattgccttttc                                                         <  1:1012801‑M1/91‑36 (MQ=255)

                                  aaCAATTTAAGTACCCGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCCATTTCTTATTGAAAAATGGAAGTTGTCttttt                                                         >  1:3536146/1‑91 (MQ=255)

                                   aCAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCtttttt                                                        <  1:2143248/91‑1 (MQ=255)

                                    cAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAGAAATGGAAGTTGTCTTTTTTa                                                       >  1:2448818/1‑91 (MQ=255)

                                    cAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTa                                                       >  1:1009795/1‑91 (MQ=255)

                                    cAATTTAAGCACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTa                                                       >  1:2088567/1‑91 (MQ=255)

                                     aaTTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTaa                                                      >  1:1804084/1‑91 (MQ=255)

                                     aaTTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTaa                                                      >  1:2259898/1‑91 (MQ=255)

                                      aTTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAAt                                                     >  1:1206163/1‑91 (MQ=255)

                                      aTTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAAt                                                     <  1:2385763/91‑1 (MQ=255)

                                       tttAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAAtt                                                    <  1:805288/91‑1 (MQ=255)

                                       tttAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAAtt                                                    >  1:1729107/1‑91 (MQ=255)

                                         tAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATtct                                                  >  1:3177734/1‑91 (MQ=255)

                                          aaGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATtctc                                                 >  1:2865890/1‑91 (MQ=255)

                                           aGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGacaacttccatttttcaataagaaattgccttttcttcttaatc                                                <  1:1973197‑M1/91‑45 (MQ=255)

                                           aGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTctct                                                <  1:1769644/91‑1 (MQ=255)

                                            gTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCtt                                               >  1:2159153/1‑91 (MQ=255)

                                            gTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCtt                                               >  1:2158838/1‑91 (MQ=255)

                                              aCCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                             <  1:220906/91‑1 (MQ=255)

                                              aCCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                             <  1:220487/91‑1 (MQ=255)

                                              aCCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                             >  1:1629923/1‑91 (MQ=255)

                                              aCCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                             >  1:1978110/1‑91 (MQ=255)

                                              aCCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                             <  1:2028242/91‑1 (MQ=255)

                                              aCCGGTAATGCTATACTTTAGAAAAGTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTa                                             <  1:1540739/91‑1 (MQ=255)

                                               ccGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTaa                                            >  1:2845801/1‑91 (MQ=255)

                                                 ggTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTaaaa                                          >  1:3956145/1‑91 (MQ=255)

                                                    aaTGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCg                                       >  1:3628432/1‑91 (MQ=255)

                                                    aaTGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCg                                       <  1:2699447/91‑1 (MQ=255)

                                                      tGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCggg                                     <  1:3259866/91‑1 (MQ=255)

                                                      tGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCggg                                     >  1:1006000/1‑91 (MQ=255)

                                                        cTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGaa                                   >  1:1411965/1‑91 (MQ=255)

                                                           taCTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACa                                <  1:3929883/91‑1 (MQ=255)

                                                           taCTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACa                                <  1:1600402/91‑1 (MQ=255)

                                                             cTTTAGAAAATTAAGATTAAGAAGATAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACaaa                              <  1:3858856/91‑1 (MQ=255)

                                                             cTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACaaa                              >  1:2569733/1‑91 (MQ=255)

                                                              tttAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACaaaa                             >  1:379540/1‑91 (MQ=255)

                                                              tttAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACaaaa                             <  1:1117925/91‑1 (MQ=255)

                                                               ttAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAg                            <  1:4083718/91‑1 (MQ=255)

                                                               ttAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAg                            <  1:2915583/91‑1 (MQ=255)

                                                                tAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGc                           >  1:2658515/1‑91 (MQ=255)

                                                                 aGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCa                          >  1:1015540/1‑91 (MQ=255)

                                                                 aGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCa                          >  1:1015442/1‑91 (MQ=255)

                                                                 aGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCa                          >  1:1287805/1‑91 (MQ=255)

                                                                     aaTTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTa                      <  1:2001185/91‑1 (MQ=255)

                                                                       ttaagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTaaa                    >  1:886052/1‑91 (MQ=255)

                                                                        taagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAAt                   <  1:3910654/91‑1 (MQ=255)

                                                                        taagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAAt                   <  1:1897084/91‑1 (MQ=255)

                                                                         aagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATg                  >  1:757311/1‑91 (MQ=255)

                                                                         aagattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATg                  >  1:1983766/1‑91 (MQ=255)

                                                                          agattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGc                 <  1:2808086/91‑1 (MQ=255)

                                                                           gattaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGcc                >  1:248611/1‑91 (MQ=255)

                                                                            attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt               <  1:3090342/91‑1 (MQ=255)

                                                                            attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt               <  1:3749399/91‑1 (MQ=255)

                                                                            attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt               >  1:1180542/1‑91 (MQ=255)

                                                                            attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt               >  1:254315/1‑91 (MQ=255)

                                                                            attaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCt               >  1:3597473/1‑91 (MQ=255)

                                                                             ttaagaAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCtt              <  1:1853540/91‑1 (MQ=255)

                                                                             ttaagaAGAAAAGGCAATTTCTGATTGAAAAATGGAAGTGGGCTTTTTTAATTCTCTTTAAAATCGGGAAACAAAAGCAGTTAAATGCCtt              >  1:3298114/1‑91 (MQ=255)

                                                                                agaagaAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTcttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaat           <  1:1196284‑M2/91‑53 (MQ=255)

                                                                                agaagaAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCttttt           <  1:1950580/91‑1 (MQ=255)

                                                                                agaagaAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCttttt           <  1:1743430/91‑1 (MQ=255)

                                                                                   agaaAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCa        <  1:1563868/91‑1 (MQ=255)

                                                                                     aaaaGacaacttccatttttcaataagaaattgccttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaattgttt      <  1:1171005‑M1/91‑87 (MQ=255)

                                                                                     aaaaGacaacttccatttttcaataagaaattgccttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaattgttt      <  1:529435‑M1/91‑87 (MQ=255)

                                                                                     aaaaGacaacttccatttttcaataagaaattgccttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaattgttt      >  1:1156650‑M1/1‑5 (MQ=255)

                                                                                      aaaGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTc     <  1:4087992/91‑1 (MQ=255)

                                                                                      aaaGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTc     <  1:4092453/91‑1 (MQ=255)

                                                                                      aaaGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTc     >  1:451317/1‑91 (MQ=255)

                                                                                      aaaGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTCGCATTc     <  1:3229933/91‑1 (MQ=255)

                                                                                         ggCAATTTCTTATTGAAAAATGGAAGTTGTcttttcttcttaatcttaattttctaaagtatagcattaccggtacttaaattgttttatg  <  1:359744‑M2/91‑62 (MQ=255)

ACGTATGGCAAATATTGAGGCATCTTCGACATAAAACAATTTAAGTACCGGTAATGCTATACTTTAGAAAATTAAGATTAAGAAGAAAAGGCAATTTCTTATTGAAAAATGGAAGTTGTCTTTTTTAATTCTCTTTAAAAGCGGGAAACAAAAGCAGTTAAATGCCTTTTTGCATTCAAT  >  USA300TCH1516_ALE/153785‑153964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.