| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 169889 = | 107 (1.090) | 55 (0.600) | 14/148 | NT | 38.2% | intergenic (+436/‑541) | repE/USA300HOU_RS07235 | Replication initiation protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 848673 | 79 (0.870) | intergenic (+678/‑202) | trxB/USA300HOU_RS04145 | Thioredoxin reductase/Nucleotide‑binding protein | |||||
ATTTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/169982‑169889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaaaTGCGCTTGCAACAAGCTTTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGG < USA300TCH1516_ALE/848673‑848584 ATTTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGA < 1:3356349/91‑1ATTTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGA < 1:3436996/91‑1ATTTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGA > 1:3229860/1‑91 TTTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAA > 1:1996587/1‑91 TTTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAA > 1:134346/1‑91 TTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAA > 1:3025595/1‑91 TTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAA > 1:2546656/1‑91 TTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAA > 1:3024862/1‑91 ccaCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAATGCGCTTGTAACAAGC < 1:1278883/88‑1 ccaCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAATGCGCTTGTAACAAGC < 1:1797281/88‑1 catCCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGC < 1:632255/88‑1 acaCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGC < 1:771434/88‑1 acaCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGC < 1:771016/88‑1 acaCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGC < 1:2933878/88‑1 aCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTT < 1:1635705/90‑1 aCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTT < 1:1258104/90‑1 aCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTT < 1:950409/90‑1 GCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAATAAGCTT < 1:289889/91‑1 CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTT < 1:10942/91‑1 CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTTT < 1:2123124/91‑1 CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTT < 1:65512/91‑1 CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTT < 1:678326/91‑1 CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTT < 1:560857/91‑1 CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTT < 1:3454537/91‑1 CCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTT < 1:3367653/91‑1 CCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATCGAAAATGCGCTTGTAACAAGCTTTTT < 1:4087959/91‑1 CCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTT < 1:808125/91‑1 CAAGTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTTTTTT < 1:3344240/91‑1 CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTT < 1:1082817/91‑1 CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTT < 1:1771197/91‑1 CAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTT < 1:1770869/91‑1 acCTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTTC < 1:3213998/89‑1 AACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCga < 1:1085712/91‑3 AACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTTTTTTC < 1:3119922/91‑1 AACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTTC < 1:2914304/91‑1 AACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTTC < 1:2914475/91‑1 AACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTTC < 1:3544251/91‑1 AACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTTC < 1:2445541/91‑1 ACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTTCA < 1:2968772/91‑1 CTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAATAAGCTTTTTTCAA < 1:3943305/91‑1 CTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAATAAGCTTTTTTCAA < 1:3817200/91‑1 CTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAATAAGCTTTTTTCAA < 1:2280692/91‑1 CTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAAtt < 1:553633/91‑3 TCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAATAAGCTTTTTTCAAttc < 1:2998913/91‑4 TCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAAttc < 1:3051904/91‑4 TCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAAttc < 1:2409663/91‑4 CGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCT < 1:985738/91‑1 CGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCT < 1:984856/91‑1 CGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCT < 1:2487725/91‑1 GCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTTTTTTCAACTC < 1:1421946/91‑1 GCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTTTTTTCAACTC < 1:1421979/91‑1 GCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAATGCGCTTGCAACAAGCTTTTTTCAACTC < 1:1422277/91‑1 GCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑TGAAAATGCGCTTGCAACAAGCTTTTTTCAACTCTA < 1:1051574/91‑1 GCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTA < 1:2303023/91‑1 GCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTA < 1:2303559/91‑1 CATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCT < 1:1201003/91‑1 CATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAG < 1:392018/91‑1 CATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCGATTCTAG < 1:3714618/91‑1 CATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAG < 1:2204234/91‑1 CATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACTAGAATTGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCT < 1:3215286/91‑1 ATTGCCTGTAGAATTTCTTTTCGAAATTCTCTATGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGT < 1:575766/91‑1 TTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTC < 1:688010/91‑1 TTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACT‑GAA‑CGAAAATGCGCTTGTAACAAGCTTTTTTCAATTCTAGTC < 1:687871/91‑1 GAAAATGCGCTTGCAACAAGCTTTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTT < 1:1916323/91‑1 AATGCGCTTGCAACAAGCTTTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGG > 1:2204939/1‑91 ATGCGCTTGCAACAAGCTTTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGG > 1:2178611/1‑91 ATGCGCTTGCAACAAGCTTTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGG > 1:220642/1‑91 ATTTCTCTTTGTTGGGGCCCCGCCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAATTGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/169982‑169889‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaaaTGCGCTTGCAACAAGCTTTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGG < USA300TCH1516_ALE/848673‑848584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |