BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	169889 =	107 (1.090)	55 (0.600)	14/148	NT	38.2%	intergenic (+436/‑541)	repE/USA300HOU_RS07235	Replication initiation protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 848673	79 (0.870)	55 (0.600)	14/148	NT	38.2%	intergenic (+678/‑202)	trxB/USA300HOU_RS04145	Thioredoxin reductase/Nucleotide‑binding protein

Only 100 of 187 total aligned reads displayed.

GAATAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCGGGGCCCCAACAAAGAG  >  USA300TCH1516_ALE/169799‑169978

gAATAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCttt                                                                                           <  1:84770/91‑1 (MQ=255)

gAATAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCttt                                                                                           <  1:2093588/91‑1 (MQ=255)

ccccaactcgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactagagttgaaaaaagcttgttgcaagcgcat                                                                                           >  1:2178611‑M1/91‑91 (MQ=255)

ccccaactcgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactagagttgaaaaaagcttgttgcaagcgcat                                                                                           >  1:220642‑M1/91‑91 (MQ=255)

  aTAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCttttt                                                                                         <  1:2105327/91‑1 (MQ=255)

  aTAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCttttt                                                                                         <  1:1647998/91‑1 (MQ=255)

  aTAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCttttt                                                                                         <  1:3280350/91‑1 (MQ=255)

  aTAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCttttt                                                                                         >  1:221571/1‑91 (MQ=255)

   tAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCtttttt                                                                                        >  1:2815463/1‑91 (MQ=255)

    aactcgcattgcctgtagaatttcttttcgaaattctctgtgttggggcccctgactagagttgaaaaaagcttgttgcaagcgcaTTTTc                                                                                       <  1:1916323‑M1/5‑1 (MQ=255)

    aGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTc                                                                                       >  1:2721242/1‑91 (MQ=255)

    aGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTc                                                                                       >  1:2509452/1‑91 (MQ=255)

          ggAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCt                                                                                 <  1:1760343/91‑1 (MQ=255)

                 aatcaatcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAgg                                                                          <  1:3975200/91‑1 (MQ=255)

                 aatcaatcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAgg                                                                          >  1:2359524/1‑91 (MQ=255)

                 aatcaatcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAgg                                                                          <  1:2602514/91‑1 (MQ=255)

                 aatcaatcTGCTATGATCTACGAAGTCATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAgg                                                                          <  1:3976217/91‑1 (MQ=255)

                  atcaatcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAggg                                                                         <  1:1793134/91‑1 (MQ=255)

                   tcaatcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAgggg                                                                        <  1:1572942/91‑1 (MQ=255)

                    caatgTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGc                                                                       <  1:3825397/91‑1 (MQ=255)

                    caatcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGc                                                                       >  1:239211/1‑91 (MQ=255)

                    caatcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGc                                                                       <  1:2834608/91‑1 (MQ=255)

                     aatcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGcc                                                                      <  1:1614357/91‑1 (MQ=255)

                      atcTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGccc                                                                     <  1:3798437/91‑1 (MQ=255)

                         ttctATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCaa                                                                  <  1:1135775/91‑1 (MQ=255)

                            tATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAacac                                                               <  1:937188/91‑1 (MQ=255)

                             aTGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAAcaca                                                              <  1:112605/91‑1 (MQ=255)

                             aTGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAAcaca                                                              <  1:2153321/91‑1 (MQ=255)

                              tGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACag                                                             <  1:2343213/91‑1 (MQ=255)

                                         gTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGaa                                                  >  1:2705982/1‑91 (MQ=39)

                                             tatTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGa                                              <  1:3905836/91‑1 (MQ=38)

                                               ttGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGaaa                                            <  1:2868890/91‑1 (MQ=39)

                                                tGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAAt                                           >  1:954253/1‑91 (MQ=39)

                                                   cAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCt                                        >  1:1774958/1‑91 (MQ=39)

                                                    aGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTa                                       >  1:223292/1‑91 (MQ=39)

                                                     gTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTAc                                      >  1:612395/1‑91 (MQ=39)

                                                     gTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTAc                                      <  1:487035/91‑1 (MQ=39)

                                                       aaTTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAg                                    >  1:671426/1‑91 (MQ=37)

                                                         ttGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGc                                  <  1:741284/91‑1 (MQ=34)

                                                         ttGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGc                                  <  1:742866/91‑1 (MQ=34)

                                                         gactagaattgaaaaaagcttgttacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCaa                                <  1:688010‑M1/58‑1 (MQ=255)

                                                          tGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCa                                 <  1:2951767/91‑1 (MQ=34)

                                                           ctagaattgaaaaaagcttgttacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATg                              <  1:2204234‑M1/60‑1 (MQ=255)

                                                           ctagaatcgaaaaaagcttgttacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATg                              <  1:3714618‑M1/60‑1 (MQ=255)

                                                            tagagttgaaaaaagcttgttgcaagcgcaTTTTCA‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGc                             <  1:1051574‑M1/61‑1 (MQ=255)

                                                            tagaattgaaaaaagcttgttacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGc                             <  1:2303023‑M1/61‑1 (MQ=255)

                                                             cTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATg                              >  1:2464959/1‑91 (MQ=34)

                                                             agaattgaaaaaagcttgttacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCg                            <  1:985738‑M1/62‑1 (MQ=255)

                                                             agaattgaaaaaagcttgttacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCg                            <  1:2487725‑M1/62‑1 (MQ=255)

                                                             agaattgaaaaaagcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATg                              <  1:3215286‑M1/62‑1 (MQ=255)

                                                              tGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGc                             <  1:3341416/91‑1 (MQ=34)

                                                              gagttgaaaaaagcttgttgcaagcgcaTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGc                             <  1:1421946‑M1/63‑1 (MQ=255)

                                                              gagttgaaaaaagcttgttgcaagcgcaTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGc                             <  1:1422277‑M1/63‑1 (MQ=255)

                                                              gaattgaaaaaagcttgttacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGa                           <  1:2409663‑M1/63‑1 (MQ=255)

                                                              gaattgaaaaaagcttattacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGa                           <  1:2998913‑M1/63‑1 (MQ=255)

                                                                aaCTAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGa                           <  1:3351636/91‑1 (MQ=21)

                                                                aaCGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGa                           <  1:441380/91‑1 (MQ=34)

                                                                 ttgaaaaaagcttattacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAg                          <  1:2280692‑M1/66‑1 (MQ=255)

                                                                 ttgaaaaaagcttattacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAg                          <  1:3943305‑M1/66‑1 (MQ=255)

                                                                 tcgaaaaaagcttgttacaagcgcaTTTTCG‑TTC‑AGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGtt                        <  1:1085712‑M1/66‑1 (MQ=255)

                                                                   gaaaaaagcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCgaggt                        <  1:3213998‑M1/68‑3 (MQ=255)

                                                                   gaaaaaagcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGtt                        <  1:2914304‑M1/68‑1 (MQ=255)

                                                                   gaaaaaagcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGtt                        <  1:3544251‑M1/68‑1 (MQ=255)

                                                                    aaaaaagcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTg                       <  1:1770869‑M1/69‑1 (MQ=255)

                                                                    aaaaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTg                       <  1:2444932/91‑1 (MQ=34)

                                                                    aaaaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTg                       >  1:3429719/1‑91 (MQ=34)

                                                                     aaaaagcttgttacaagcgcaTTTTCGATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAGTTgg                      <  1:4087959‑M1/70‑1 (MQ=255)

                                                                     aaaaagcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgg                      <  1:808125‑M1/70‑1 (MQ=255)

                                                                     aaaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgg                      >  1:4146801/1‑91 (MQ=34)

                                                                      aaggcgcTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggg                     <  1:1898722/88‑1 (MQ=18)

                                                                      aaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggg                     <  1:1012790/91‑1 (MQ=34)

                                                                      aaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggg                     >  1:151325/1‑91 (MQ=34)

                                                                      aaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggg                     >  1:3076857/1‑91 (MQ=34)

                                                                      aaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggg                     <  1:404561/91‑1 (MQ=34)

                                                                      aaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggg                     >  1:3287079/1‑91 (MQ=33)

                                                                      aaTGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggg                     <  1:2538196/91‑1 (MQ=34)

                                                                       aaagcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgggg                    <  1:560857‑M1/72‑1 (MQ=255)

                                                                       aaagcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTgggg                    <  1:678326‑M1/72‑1 (MQ=255)

                                                                        tGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggc                   >  1:415189/1‑91 (MQ=35)

                                                                        aagcttgttgcaagcgcaTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTtggggt                   <  1:1258104‑M1/73‑2 (MQ=255)

                                                                        aagcttgttgcaagcgcaTTTTCAACTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTtggggt                   <  1:1635705‑M1/73‑2 (MQ=255)

                                                                         gcgcTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcg                  <  1:1858970/91‑1 (MQ=37)

                                                                         gcgcTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcg                  >  1:286750/1‑91 (MQ=37)

                                                                         gcgcTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcg                  >  1:4004528/1‑91 (MQ=37)

                                                                         gcgcTTGCAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcc                  <  1:2074762/91‑2 (MQ=25)

                                                                          gcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAgttggggtgt                 <  1:771434‑M1/75‑4 (MQ=255)

                                                                          gcttgttacaagcgcaTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCAAgttggggatg                 <  1:632255‑M1/75‑4 (MQ=255)

                                                                          cgcTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcgg                 <  1:2285670/91‑1 (MQ=37)

                                                                          cgcTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcgg                 <  1:1986750/91‑1 (MQ=37)

                                                                          cgcTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcgg                 <  1:136729/91‑1 (MQ=38)

                                                                           gcTCGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcccc                <  1:3733067/91‑4 (MQ=255)

                                                                            cTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcgggg               >  1:3698916/1‑91 (MQ=40)

                                                                             ttGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcggggc              <  1:1740246/91‑1 (MQ=40)

                                                                             ttGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcggggc              <  1:3051422/91‑1 (MQ=40)

                                                                             ttGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTggggcggggc              <  1:3988289/91‑1 (MQ=40)

                                                                               gTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCGGGGccc            <  1:2933596/91‑1 (MQ=255)

                                                                                taataaGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCGGGGcccc           <  1:3110605/91‑1 (MQ=255)

                                                                                   taaGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCGGGGCCCcaac        <  1:2911280/91‑1 (MQ=255)

                                                                                     aGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCGGGGCCCcaacaa      <  1:2900634/91‑1 (MQ=255)

                                                                                     aGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCGGGGCCCcaacaa      <  1:1287356/91‑1 (MQ=255)

GAATAGGCTGGGAAATAAATCAATCTTCTATGATCTACGAAGTTATATTGGCAGTAATTGACTGAACGAAAATGCGCTTGTAATAAGCTTTTTTCAATTCTAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCGGGGCCCCAACAAAGAG  >  USA300TCH1516_ALE/169799‑169978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.