BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	169889 =	107 (1.090)	55 (0.600)	14/148	NT	38.2%	intergenic (+436/‑541)	repE/USA300HOU_RS07235	Replication initiation protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 848673	79 (0.870)	55 (0.600)	14/148	NT	38.2%	intergenic (+678/‑202)	trxB/USA300HOU_RS04145	Thioredoxin reductase/Nucleotide‑binding protein

Only 100 of 147 total aligned reads displayed.

CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAATGATGTATATT  >  USA300TCH1516_ALE/848584‑848761

ccccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAt                                                                                         >  1:220642‑M2/1‑90 (MQ=255)

ccccAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCAt                                                                                         >  1:2178611‑M2/1‑90 (MQ=255)

      cTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTttcat                                                                                   >  1:3745833/1‑91 (MQ=255)

          cATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAg                                                                               >  1:457947/1‑91 (MQ=255)

           aTTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGt                                                                              <  1:4146306/91‑1 (MQ=255)

            ttGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTc                                                                             <  1:3833109/91‑1 (MQ=255)

               ccTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAac                                                                          <  1:2325971/91‑1 (MQ=40)

               ccTGTAGAATTGCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAac                                                                          <  1:3757641/91‑1 (MQ=255)

                cTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAact                                                                         <  1:2144042/91‑1 (MQ=255)

                    aGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAActacta                                                                     >  1:1658528/1‑91 (MQ=255)

                     gAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAg                                                                    <  1:2930228/91‑1 (MQ=255)

                      aaTTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGc                                                                   <  1:1993316/91‑1 (MQ=255)

                        tttCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaa                                                                 >  1:1682542/1‑91 (MQ=255)

                          tCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaata                                                               >  1:2228120/1‑91 (MQ=255)

                           cTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatat                                                              <  1:2676002/91‑1 (MQ=255)

                           cTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatat                                                              <  1:2676892/91‑1 (MQ=255)

                              ttCGAAATTCTCTGTGTTTGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatataat                                                           >  1:358037/1‑91 (MQ=255)

                               tCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatataata                                                          >  1:2252071/1‑91 (MQ=255)

                               aagAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCaatataata                                                          >  1:1283835/3‑91 (MQ=255)

                                 gAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatt                                                        <  1:2419466/91‑1 (MQ=255)

                                 gAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatt                                                        <  1:2418732/91‑1 (MQ=255)

                                 gAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatt                                                        >  1:1249479/1‑91 (MQ=255)

                                  aaaTTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtatta                                                       <  1:1536350/91‑1 (MQ=255)

                                   aaTTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtattat                                                      >  1:4027057/1‑91 (MQ=255)

                                   aaTTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAAtattat                                                      <  1:2336439/91‑1 (MQ=255)

                                       ctctGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGAc                                                  >  1:3514977/1‑91 (MQ=255)

                                          tgtgTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCt                                               >  1:2646143/1‑91 (MQ=255)

                                          tgtgTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCt                                               >  1:2646261/1‑91 (MQ=255)

                                            tgtTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAg                                             >  1:2157569/1‑91 (MQ=255)

                                             gtTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAgg                                            >  1:3915989/1‑91 (MQ=255)

                                                ggggCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACa                                         >  1:1122789/1‑91 (MQ=255)

                                                ggggCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACa                                         <  1:578457/91‑1 (MQ=255)

                                                ggggCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACa                                         <  1:1936853/91‑1 (MQ=255)

                                                 gggCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACAt                                        >  1:2540274/1‑91 (MQ=255)

                                                   gCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTg                                      >  1:300643/1‑91 (MQ=255)

                                                   gCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTg                                      <  1:3146780/91‑1 (MQ=255)

                                                   gCCCCCGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTg                                      <  1:2292375/91‑1 (MQ=255)

                                                     cccTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAt                                    >  1:340937/1‑91 (MQ=255)

                                                     cccTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAt                                    >  1:3479375/1‑91 (MQ=255)

                                                     cccTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAt                                    >  1:3479422/1‑91 (MQ=255)

                                                     cccTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGAt                                    <  1:2959309/91‑1 (MQ=255)

                                                        tGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTa                                 >  1:1373251/1‑91 (MQ=255)

                                                         gACTAGAATTGAAAAAAGCTTGTTACAAGCGCAttttcgttcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaa                                <  1:688010‑M2/91‑59 (MQ=255)

                                                           cTAGAATTGAAAAAAGCTTGTTACAAGCGCAttttcgttcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatg                              <  1:2204234‑M2/91‑61 (MQ=255)

                                                           cTAGAATCGAAAAAAGCTTGTTACAAGCGCAttttcgttcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatg                              <  1:3714618‑M2/91‑61 (MQ=255)

                                                            tAGAGTTGAAAAAAGCTTGTTGCAAGCGCAttttcattcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgc                             <  1:1051574‑M2/91‑62 (MQ=255)

                                                            tAGAATTGAAAAAAGCTTGTTACAAGCGCAttttcgttcagtcaggggccccaacatagagaatttcgaaaagaaattctacaggcaatgc                             <  1:2303023‑M2/91‑62 (MQ=255)

                                                             agagTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTcc                            >  1:3748919/1‑91 (MQ=255)

                                                             agaaTTGAAAAAAGCTTGTTACAAGCGCAttttcgttcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcg                            <  1:984856‑M2/91‑63 (MQ=255)

                                                             agaaTTGAAAAAAGCTTGTTACAAGCGCAttttcgttcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcg                            <  1:985738‑M2/91‑63 (MQ=255)

                                                             agaaTTGAAAAAAGCTTGTTACAAGCGCAttttcgttcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcg                            <  1:2487725‑M2/91‑63 (MQ=255)

                                                              gagTTGAAAAAAGCTTGTTGCAAGCGCAttttcaactctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgc                           <  1:1421979‑M2/91‑64 (MQ=255)

                                                              gagTTGAAAAAAGCTTGTTGCAAGCGCAttttcaactctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgc                           <  1:1422277‑M2/91‑64 (MQ=255)

                                                              gagTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTccc                           <  1:1659659/91‑1 (MQ=255)

                                                              gaattgaaAAAAGCTTATTACAAGCGCAttttcgttcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcga                           <  1:2998913‑M2/88‑64 (MQ=255)

                                                               aattgaAAAAAGCTTGTTACAAGCGCAttttcgttcagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgag                          <  1:553633‑M2/89‑65 (MQ=255)

                                                                gTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCaa                         >  1:1205286/1‑91 (MQ=255)

                                                                gTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCaa                         <  1:505333/91‑1 (MQ=255)

                                                                gTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCaa                         >  1:1205377/1‑91 (MQ=255)

                                                                gTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCaa                         <  1:3081798/91‑1 (MQ=255)

                                                                 ttGAAAAAAGCTTATTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgag                        <  1:3943305‑M2/91‑67 (MQ=255)

                                                                 ttGAAAAAAGCTTATTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgag                        <  1:3817200‑M2/91‑67 (MQ=255)

                                                                  tGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGc                       <  1:1032530/91‑1 (MQ=255)

                                                                  tGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGc                       >  1:1797375/1‑91 (MQ=255)

                                                                  tGAAAAAAGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagt                       <  1:2968772‑M2/91‑68 (MQ=255)

                                                                   gAAAAAAGCTTGTTGCAAGCGCAttttcaactctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagtt                      <  1:3119922‑M2/91‑69 (MQ=255)

                                                                   gAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCt                      <  1:1974563/91‑1 (MQ=255)

                                                                   gAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCt                      <  1:3126989/91‑1 (MQ=255)

                                                                   gAAAAAAGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcgaggt                      <  1:3213998‑M2/91‑69 (MQ=255)

                                                                   gAAAAAAGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagtt                      <  1:2914475‑M2/91‑69 (MQ=255)

                                                                   gAAAAAAGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagtt                      <  1:2914304‑M2/91‑69 (MQ=255)

                                                                   gAAAAAAGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagtt                      <  1:3544251‑M2/91‑69 (MQ=255)

                                                                    aaaaaaGCTTGTTGCAAGCGCAttttcaactctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgacttg                     <  1:3344240‑M2/91‑70 (MQ=255)

                                                                    aaaaaaGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTc                     <  1:2805307/91‑1 (MQ=255)

                                                                    aaaaaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttg                     <  1:1771197‑M2/91‑70 (MQ=255)

                                                                    aaaaaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttg                     <  1:1082817‑M2/91‑70 (MQ=255)

                                                                    aaaaaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttg                     <  1:1770869‑M2/91‑70 (MQ=255)

                                                                     aaaaaGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTcc                    >  1:1870811/1‑91 (MQ=255)

                                                                     aaaaaGCTTGTTACAAGCGCAttttcgattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcaagttgg                    <  1:4087959‑M2/91‑71 (MQ=255)

                                                                     aaaaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcgagttgg                    <  1:808125‑M2/91‑71 (MQ=255)

                                                                      aaaaGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCt                   <  1:1928652/91‑1 (MQ=255)

                                                                       aaaGCTTGTTGCAAGCGCAttttcaactctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttgggg                  <  1:2123124‑M2/91‑73 (MQ=255)

                                                                       aaaGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCtt                  >  1:3923490/1‑91 (MQ=255)

                                                                       aaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcgagttgggg                  <  1:3454537‑M2/91‑73 (MQ=255)

                                                                       aaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcgagttgggg                  <  1:560857‑M2/91‑73 (MQ=255)

                                                                       aaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttgggg                  <  1:65512‑M2/91‑73 (MQ=255)

                                                                       aaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttgggg                  <  1:678326‑M2/91‑73 (MQ=255)

                                                                       aaaGCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcaagttgggg                  <  1:10942‑M2/91‑73 (MQ=255)

                                                                        aaGCTTGTTGCAAGCGCAttttcaactctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcgagttggggt                 <  1:1258104‑M2/91‑74 (MQ=255)

                                                                          gCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacatagagaatttcgaaaagaaattctacaggcaatgcgagttggggtgt               <  1:771434‑M2/91‑76 (MQ=255)

                                                                          gCTTGTTACAAGCGCAttttcaattctagtcaggggccccaacacagagaatttcgaaaagaaattctacaggcaatgcaagttggggatg               <  1:632255‑M2/91‑76 (MQ=255)

                                                                             tgttgCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAat            >  1:732768/1‑91 (MQ=255)

                                                                             tgttgCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAat            >  1:3212728/1‑91 (MQ=255)

                                                                              gttgCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAatg           >  1:3987667/1‑91 (MQ=255)

                                                                                tgCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAatgat         <  1:49248/91‑1 (MQ=255)

                                                                                tgCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAatgat         >  1:1428809/1‑91 (MQ=255)

                                                                                  cAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAATGATGt       <  1:3908925/91‑1 (MQ=255)

                                                                                     gcgcATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAATGATGtata    <  1:3253224/91‑1 (MQ=255)

                                                                                     gcgcATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCCCCTTTTAAATGATGtata    >  1:2895358/1‑91 (MQ=255)

                                                                                       gcATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAATGATGTATAtt  <  1:2198678/91‑1 (MQ=255)

CCCCAACTCGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCTGACTAGAGTTGAAAAAAGCTTGTTGCAAGCGCATTTTCATTCAGTCAACTACTAGCAATATAATATTATAGACCCTAGGACATTGATTTATGTCCCAAGCTCCTTTTAAATGATGTATATT  >  USA300TCH1516_ALE/848584‑848761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.