| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 227487 | 79 (0.800) | 6 (0.060) | 5/152 | NT | 7.3% | coding (212/879 nt) | ybbH_1 | putative HTH‑type transcriptional regulator YbbH |
| ? | USA300TCH1516_ALE | = 227515 | 77 (0.820) | coding (240/879 nt) | ybbH_1 | putative HTH‑type transcriptional regulator YbbH | |||||
ATGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/227394‑227487‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcAATATCTTCGGGTAAGTATCGAGATATCGCAATCTTTAGCTCTTGAAAACCTTGATGTGTCATTTTCCGACTAAATCTAACAATTGATGC < USA300TCH1516_ALE/227515‑227426 ATGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGAT > 1:2456932/1‑91ATGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGAT > 1:2458565/1‑91 TGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATT < 1:1987744/91‑1 TGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATT > 1:3684396/1‑91 TGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATT > 1:3684267/1‑91 TGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATT < 1:3047458/91‑1 ATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGC < 1:2845291/91‑1 ATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGC < 1:2692422/91‑1 AGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCAATATCTTCGGGTAAGTATCGAG < 1:2348196/91‑1 AGCGTCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCAATATCTTCGGGTAAGTATCGAGATATC < 1:3337675/91‑1 CAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCAATATCTTCGGGTAAGTATCGAGATATCGCAAT < 1:80599/91‑1 TTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCAATATCTTCGGGTAAGTATCGAGATATCGCAATCTT < 1:3903820/91‑1 TTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCAATATCTTCGGGTAAGTATCGAGATATCGCAATCTT < 1:3904497/91‑1 TTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCAATATCTTCGGGTAAGTATCGAGATATCGCAATCTTTAGCTCTTG < 1:594769/91‑1 TTGCAATATCTTCGGGTAAGTATCGAGATATCGCAATCTTTAGCTCTTGAAAACCTTGATGTGTCATTTTCCGACTAAATCTAACAATTGA < 1:2857063/91‑1 TTGCAATATCTTCGGGTAAGTATCGAGATATCGCAATCTTTAGCTCTTGAAAACCTTGATGTGTCATTTTCCGACTAAATCTAACAATTGA < 1:3240300/91‑1 CAATATCTTCGGGTAAGTATCGAGATATCGCAATCTTTAGCTCTTGAAAACCTTGATGTGTCATTTTCCGACTAAATCTAACAATTGATGC < 1:1693388/91‑1 ATGATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/227394‑227487‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcAATATCTTCGGGTAAGTATCGAGATATCGCAATCTTTAGCTCTTGAAAACCTTGATGTGTCATTTTCCGACTAAATCTAACAATTGATGC < USA300TCH1516_ALE/227515‑227426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |