| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 227487 | 79 (0.800) | 6 (0.060) | 5/152 | NT | 7.3% | coding (212/879 nt) | ybbH_1 | putative HTH‑type transcriptional regulator YbbH |
| ? | USA300TCH1516_ALE | = 227515 | 77 (0.820) | coding (240/879 nt) | ybbH_1 | putative HTH‑type transcriptional regulator YbbH | |||||
AGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGATGCG > USA300TCH1516_ALE/227425‑227604 | aGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATAtt < 1:1888708/91‑1 (MQ=255) gCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTg < 1:1693388‑M2/91‑2 (MQ=255) tCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTgcaa < 1:2857063‑M2/91‑5 (MQ=255) tCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTgcaa < 1:3240300‑M2/91‑5 (MQ=255) tGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAAt < 1:2518660/91‑1 (MQ=255) tGTTAGATTTAGTCGAAAAAGGACACATCAAGGTTTTCAAGAGCTAATGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAAt < 1:187694/91‑1 (MQ=255) gTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATc < 1:2715389/91‑1 (MQ=255) ttAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATcc > 1:2636461/1‑91 (MQ=255) tAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCca < 1:2316490/91‑1 (MQ=255) aGATTTAGTCGTAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCcac < 1:3765783/91‑1 (MQ=255) aGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCcac < 1:869796/91‑1 (MQ=255) tttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAATATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACAtt > 1:3595263/1‑91 (MQ=255) tttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACAtt > 1:2225076/1‑91 (MQ=255) tttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACAtt < 1:381314/91‑1 (MQ=255) tttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACAtt > 1:3345104/1‑91 (MQ=255) gTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGa > 1:896316/1‑91 (MQ=255) gTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGa > 1:3706939/1‑91 (MQ=255) gTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGa > 1:3934430/1‑91 (MQ=255) gTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGa > 1:700356/1‑91 (MQ=255) tCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGaa < 1:2499324/91‑1 (MQ=255) cGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAat > 1:1457675/1‑91 (MQ=255) cGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAat > 1:1457657/1‑91 (MQ=255) cGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAat > 1:1457656/1‑91 (MQ=255) aaaaTGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAattga > 1:2821636/1‑91 (MQ=255) aaaTGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAattgat < 1:1954780/91‑1 (MQ=255) aaaTGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAattgat < 1:3785643/91‑1 (MQ=255) aTGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAattgattg < 1:3464455/91‑1 (MQ=255) gACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGaa < 1:3260017/91‑1 (MQ=255) cacaTCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGaaaa > 1:1023229/1‑91 (MQ=255) cacaTCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGaaaa < 1:1921024/91‑1 (MQ=255) acaTCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAAt > 1:1625755/1‑91 (MQ=255) cAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAAt < 1:193897/91‑1 (MQ=255) aGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCt < 1:1946224/91‑1 (MQ=255) ggTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTg > 1:3705077/1‑91 (MQ=255) ggTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTg > 1:3704643/1‑91 (MQ=255) gTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGt < 1:2187106/91‑1 (MQ=255) gTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGt > 1:3151136/1‑91 (MQ=255) gTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGt < 1:2781300/91‑1 (MQ=255) ttttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTa > 1:1062355/1‑91 (MQ=255) ttttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTa > 1:926391/1‑91 (MQ=255) ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa > 1:4064292/1‑91 (MQ=255) ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa > 1:1414329/1‑91 (MQ=255) ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa < 1:1957336/91‑1 (MQ=255) ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa > 1:2293100/1‑91 (MQ=255) ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa > 1:2226480/1‑91 (MQ=255) cAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaa < 1:594769‑M2/91‑47 (MQ=255) cAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGaaa > 1:3085753/1‑91 (MQ=255) agagCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACt > 1:1832827/1‑91 (MQ=255) gagCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACtt > 1:100245/1‑91 (MQ=255) agCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACttt > 1:3045654/1‑91 (MQ=255) agCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACttt > 1:3129095/1‑91 (MQ=255) gCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTg > 1:3269441/1‑91 (MQ=255) aaGATTGCGATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaa < 1:3903820‑M2/91‑56 (MQ=255) aaGATTGCGATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaa < 1:3904497‑M2/91‑56 (MQ=255) aGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGaaaaa < 1:931857/91‑1 (MQ=255) aGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGaaaaa > 1:2899556/1‑91 (MQ=255) aTTGCGATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaattg < 1:80599‑M2/91‑59 (MQ=255) aTTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaata > 1:240133/1‑91 (MQ=255) gCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaa < 1:1988385/91‑1 (MQ=255) gCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaa < 1:1987377/91‑1 (MQ=255) gCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaa < 1:1091191/91‑1 (MQ=255) cGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaat > 1:1998464/1‑91 (MQ=255) cGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaat > 1:2727242/1‑91 (MQ=255) gATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaattgacgct < 1:3337675‑M2/91‑64 (MQ=255) gATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATg > 1:3883909/1‑91 (MQ=255) gATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATg < 1:3814371/91‑1 (MQ=255) gATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATg > 1:71203/1‑91 (MQ=255) atatCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGa > 1:202263/1‑91 (MQ=255) atatCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGa > 1:2545111/1‑91 (MQ=255) atatCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGa < 1:4090655/91‑1 (MQ=255) atCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGAtt > 1:1683902/1‑91 (MQ=255) tctcGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTg > 1:2168626/1‑91 (MQ=255) ctcGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaattgatgctgtact < 1:2348196‑M2/91‑69 (MQ=255) ctcGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGc < 1:1285113/91‑1 (MQ=255) gATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTag < 1:1799187/91‑1 (MQ=255) gATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTag < 1:1799031/91‑1 (MQ=255) gATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTag > 1:3336273/1‑91 (MQ=255) aTACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTaga > 1:2655909/1‑91 (MQ=255) gcTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGc < 1:3299988/90‑1 (MQ=255) ttACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCaa > 1:3625853/1‑91 (MQ=255) ttACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCaa > 1:2697587/1‑91 (MQ=255) aCCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACg > 1:98004/1‑91 (MQ=255) aCCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACg > 1:3334193/1‑91 (MQ=255) cccGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGa > 1:650287/1‑91 (MQ=255) cccGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGa > 1:2938105/1‑91 (MQ=255) cGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAAt < 1:41445/91‑1 (MQ=255) cGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAAt < 1:3227979/91‑1 (MQ=255) cGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAAt < 1:2539327/91‑1 (MQ=255) aaGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATAc > 1:198730/1‑91 (MQ=255) atatTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGAt < 1:668693/91‑1 (MQ=255) tatTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGATg > 1:3863101/1‑91 (MQ=255) tatTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGATg > 1:3072382/1‑91 (MQ=255) tatTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGATg > 1:919716/1‑91 (MQ=255) ttGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGATGCg > 1:1092928/1‑91 (MQ=255) ttGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGATGCg > 1:2813519/1‑91 (MQ=255) ttGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGATGCg > 1:2104002/1‑91 (MQ=255) | AGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAATGATTGCTAGAGCAACGAATACGATGCG > USA300TCH1516_ALE/227425‑227604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |