BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 227487	79 (0.800)	6 (0.060)	5/152	NT	7.3%	coding (212/879 nt)	ybbH_1	putative HTH‑type transcriptional regulator YbbH
*	?	USA300TCH1516_ALE	= 227515	77 (0.820)	6 (0.060)	5/152	NT	7.3%	coding (240/879 nt)	ybbH_1	putative HTH‑type transcriptional regulator YbbH

Only 100 of 107 total aligned reads displayed.

ATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAAT  >  USA300TCH1516_ALE/227397‑227577

aTTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGC                                                                                            <  1:2692422‑M1/91‑1 (MQ=255)

aTTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGC                                                                                            <  1:2845291‑M1/91‑1 (MQ=255)

 tttGGCAGATGTTACGCATGTTAGTACAGCATCAATTGTGAGATTTAGTCGGCAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCg                                                                                           <  1:2728513/91‑1 (MQ=255)

 tttGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCg                                                                                           <  1:486192/91‑1 (MQ=255)

   tGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGat                                                                                         >  1:1182233/1‑91 (MQ=255)

   tGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGat                                                                                         >  1:1993777/1‑91 (MQ=255)

      cAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATAtc                                                                                      >  1:3037320/1‑91 (MQ=255)

        gATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATAtctc                                                                                    >  1:2597486/1‑91 (MQ=255)

        gATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATAtctc                                                                                    <  1:409381/91‑1 (MQ=255)

          tGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGa                                                                                  <  1:3472350/91‑1 (MQ=255)

           gTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGAt                                                                                 >  1:792257/1‑91 (MQ=255)

            ttACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATa                                                                                >  1:360863/1‑91 (MQ=255)

              aCGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACt                                                                              >  1:1151813/1‑91 (MQ=255)

              aCGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACt                                                                              >  1:1151831/1‑91 (MQ=255)

              aCGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACt                                                                              >  1:2637921/1‑91 (MQ=255)

              aCGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACt                                                                              >  1:2316380/1‑91 (MQ=255)

                gAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTa                                                                            >  1:2388538/1‑91 (MQ=255)

                gAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTACAAGAGCTAAAGATTGCGATATCTCGATACTTa                                                                            >  1:3395767/1‑91 (MQ=255)

                  aTGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTAcc                                                                          >  1:2859618/1‑91 (MQ=255)

                   tGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTAccc                                                                         <  1:830749/91‑1 (MQ=255)

                    gTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCg                                                                        <  1:2671925/91‑1 (MQ=255)

                      tAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGaa                                                                      <  1:3340880/91‑1 (MQ=255)

                       aGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCaatatcttcgggtaagtatcgag                                                                     <  1:2348196‑M1/91‑24 (MQ=255)

                       aGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTGCCCGAAg                                                                     >  1:2067666/1‑91 (MQ=255)

                       aGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAg                                                                     >  1:403/1‑91 (MQ=255)

                       aGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAg                                                                     >  1:289/1‑91 (MQ=255)

                       aGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAg                                                                     >  1:3556228/1‑91 (MQ=255)

                       aGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAg                                                                     >  1:900/1‑91 (MQ=255)

                        gTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGa                                                                    <  1:422860/91‑1 (MQ=255)

                        gTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGa                                                                    <  1:2646113/91‑1 (MQ=255)

                        gTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGa                                                                    <  1:1421892/91‑1 (MQ=255)

                        gTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGa                                                                    <  1:3468387/91‑1 (MQ=255)

                            aGCGTCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCaatatcttcgggtaagtatcgagatatc                                                                <  1:3337675‑M1/91‑29 (MQ=255)

                            aGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATAtt                                                                <  1:1888708/91‑1 (MQ=255)

                             gCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTg                                                               <  1:1693388‑M2/91‑2 (MQ=255)

                                tCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTgcaa                                                            <  1:3240300‑M2/91‑5 (MQ=255)

                                tCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTgcaa                                                            <  1:2857063‑M2/91‑5 (MQ=255)

                                 cAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCaatatcttcgggtaagtatcgagatatcgcaat                                                           <  1:80599‑M1/91‑34 (MQ=255)

                                    ttGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCaatatcttcgggtaagtatcgagatatcgcaatctt                                                        <  1:3903820‑M1/91‑37 (MQ=255)

                                    ttGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCaatatcttcgggtaagtatcgagatatcgcaatctt                                                        <  1:3904497‑M1/91‑37 (MQ=255)

                                     tGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAAt                                                       <  1:2518660/91‑1 (MQ=255)

                                     tGTTAGATTTAGTCGAAAAAGGACACATCAAGGTTTTCAAGAGCTAATGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAAt                                                       <  1:187694/91‑1 (MQ=255)

                                      gTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATc                                                      <  1:2715389/91‑1 (MQ=255)

                                       ttAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATcc                                                     >  1:2636461/1‑91 (MQ=255)

                                        tAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCca                                                    <  1:2316490/91‑1 (MQ=255)

                                         aGATTTAGTCGTAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCcac                                                   <  1:3765783/91‑1 (MQ=255)

                                         aGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCcac                                                   <  1:869796/91‑1 (MQ=255)

                                            tttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAATATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACAtt                                                >  1:3595263/1‑91 (MQ=255)

                                            tttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACAtt                                                <  1:381314/91‑1 (MQ=255)

                                            tttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACAtt                                                >  1:2225076/1‑91 (MQ=255)

                                            tttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACAtt                                                >  1:3345104/1‑91 (MQ=255)

                                             ttAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCaatatcttcgggtaagtatcgagatatcgcaatctttagctcttg                                               <  1:594769‑M1/91‑46 (MQ=255)

                                                gTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGa                                            >  1:3706939/1‑91 (MQ=255)

                                                gTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGa                                            >  1:3934430/1‑91 (MQ=255)

                                                gTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGa                                            >  1:896316/1‑91 (MQ=255)

                                                gTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGa                                            >  1:700356/1‑91 (MQ=255)

                                                 tCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGaa                                           <  1:2499324/91‑1 (MQ=255)

                                                  cGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAat                                          >  1:1457656/1‑91 (MQ=255)

                                                  cGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAat                                          >  1:1457657/1‑91 (MQ=255)

                                                  cGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAat                                          >  1:1457675/1‑91 (MQ=255)

                                                     aaaaTGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAattga                                       >  1:2821636/1‑91 (MQ=255)

                                                      aaaTGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAattgat                                      <  1:3785643/91‑1 (MQ=255)

                                                      aaaTGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAattgat                                      <  1:1954780/91‑1 (MQ=255)

                                                        aTGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAattgattg                                    <  1:3464455/91‑1 (MQ=255)

                                                          gACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGaa                                  <  1:3260017/91‑1 (MQ=255)

                                                            cacaTCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGaaaa                                >  1:1023229/1‑91 (MQ=255)

                                                            cacaTCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGaaaa                                <  1:1921024/91‑1 (MQ=255)

                                                             acaTCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAAt                               >  1:1625755/1‑91 (MQ=255)

                                                                 cAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAAt                           <  1:193897/91‑1 (MQ=255)

                                                                   aGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCt                         <  1:1946224/91‑1 (MQ=255)

                                                                    ggTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTg                        >  1:3704643/1‑91 (MQ=255)

                                                                    ggTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTg                        >  1:3705077/1‑91 (MQ=255)

                                                                     gTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGt                       <  1:2187106/91‑1 (MQ=255)

                                                                     gTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGt                       <  1:2781300/91‑1 (MQ=255)

                                                                      ttttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTa                      >  1:926391/1‑91 (MQ=255)

                                                                      ttttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTa                      >  1:1062355/1‑91 (MQ=255)

                                                                        ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa                    >  1:2293100/1‑91 (MQ=255)

                                                                        ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa                    <  1:1957336/91‑1 (MQ=255)

                                                                        ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa                    >  1:4064292/1‑91 (MQ=255)

                                                                        ttCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGa                    >  1:1414329/1‑91 (MQ=255)

                                                                          cAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaa                  <  1:594769‑M2/91‑47 (MQ=255)

                                                                          cAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGaaa                  >  1:3085753/1‑91 (MQ=255)

                                                                             gagCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACtt               >  1:100245/1‑91 (MQ=255)

                                                                              agCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACttt              >  1:3045654/1‑91 (MQ=255)

                                                                              agCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACttt              >  1:3129095/1‑91 (MQ=255)

                                                                               gCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTg             >  1:3269441/1‑91 (MQ=255)

                                                                                   aaGATTGCGATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaa         <  1:3904497‑M2/91‑56 (MQ=255)

                                                                                   aaGATTGCGATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaa         <  1:3903820‑M2/91‑56 (MQ=255)

                                                                                    aGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGaaaaa        <  1:931857/91‑1 (MQ=255)

                                                                                    aGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGaaaaa        >  1:2899556/1‑91 (MQ=255)

                                                                                      aTTGCGATATCTCGATACTTACCCGAAGATATTgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaattg      <  1:80599‑M2/91‑59 (MQ=255)

                                                                                      aTTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaata      >  1:240133/1‑91 (MQ=255)

                                                                                       ttGCaatatcttcgggtaagtatcgagatatcgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaattga     <  1:3240300‑M1/91‑88 (MQ=255)

                                                                                       ttGCaatatcttcgggtaagtatcgagatatcgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaattga     <  1:2857063‑M1/91‑88 (MQ=255)

                                                                                         gCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaa   <  1:1987377/91‑1 (MQ=255)

                                                                                         gCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaa   <  1:1091191/91‑1 (MQ=255)

                                                                                         gCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaa   <  1:1988385/91‑1 (MQ=255)

                                                                                          caatatcttcgggtaagtatcgagatatcgcaatctttagctcttgaaaaccttgatgtgtcattttccgactaaatctaacaattgatgc  <  1:1693388‑M1/91‑91 (MQ=255)

                                                                                          cGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaat  >  1:1998464/1‑91 (MQ=255)

                                                                                          cGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAaaaataaaat  >  1:2727242/1‑91 (MQ=255)

ATTTGGCAGATGTTACGAATGTTAGTACAGCATCAATTGTTAGATTTAGTCGGAAAATGACACATCAAGGTTTTCAAGAGCTAAAGATTGCGATATCTCGATACTTACCCGAAGATATTGCAACCAATCCACATTTAGAATTGATTGAAAATGAATCTGTAGAAACTTTGAAAAATAAAAT  >  USA300TCH1516_ALE/227397‑227577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.