| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 257948 | 79 (0.800) | 6 (0.070) | 4/146 | NT | 6.9% | coding (974/1557 nt) | USA300HOU_RS01140 | putative sensor‑like histidine kinase |
| ? | USA300TCH1516_ALE | = 257968 | 89 (0.990) | coding (954/1557 nt) | USA300HOU_RS01140 | putative sensor‑like histidine kinase | |||||
CGTAACATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/257852‑257948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggaaatAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAACTG < USA300TCH1516_ALE/257968‑257880 CGTAACATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATA < 1:4085691/91‑1 GTAACATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATCTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAG > 1:3596369/1‑91 TAACATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGG > 1:3899883/1‑91 AACATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAACAGGA > 1:3463119/1‑91 ATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAAT > 1:591707/1‑91 ATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAAT > 1:2586243/1‑91 ACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATAGAACGCCAATTCCAGCCTCA < 1:3621430/91‑1 TTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATAGAACGCCAATTCCAGCCTCATTTCC < 1:3647025/91‑1 TTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATAGAACGCCAATTCCAGCCTCATTTCC < 1:3646979/91‑1 TTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATAGAACGCCAATTCCAGCCTCATTTCC < 1:3646920/91‑1 CTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATAGAACGCCAATTCCAGCCTCATTTCCTATTC < 1:1212080/91‑1 TAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATAGAACGCCAATTCCAGCCTCATTTCCTATTCA < 1:2792565/91‑1 AGGAAATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACA > 1:3695110/1‑91 AGGAAATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACA < 1:1192331/91‑1 GAAATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAA < 1:3410135/91‑1 GAAATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAA < 1:3436768/91‑1 GAAATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAA < 1:2118173/91‑1 AAATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAAC > 1:256091/1‑91 AATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAACT > 1:3773418/1‑91 ATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAACTG < 1:3040334/91‑1 ATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAACTG < 1:2716240/91‑1 ATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAACTG > 1:2706922/1‑91 ATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAACTG < 1:1365061/91‑1 ATAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATAATTTATTACGTTATCTCCGAAATTAGCACAAACTG < 1:1836862/91‑1 CGTAACATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/257852‑257948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggaaatAGAACGCCAATTCCAGCCTCATTTCCTATTCAATACGATGCAAACAATACAATATTTAATTACGTTATCTCCGAAATTAGCACAAACTG < USA300TCH1516_ALE/257968‑257880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |