BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 257948	79 (0.800)	6 (0.070)	4/146	NT	6.9%	coding (974/1557 nt)	USA300HOU_RS01140	putative sensor‑like histidine kinase
*	?	USA300TCH1516_ALE	= 257968	89 (0.990)	6 (0.070)	4/146	NT	6.9%	coding (954/1557 nt)	USA300HOU_RS01140	putative sensor‑like histidine kinase

Only 100 of 142 total aligned reads displayed.

ATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTG  >  USA300TCH1516_ALE/257858‑258038

aTTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAAT                                                                                            >  1:591707‑M1/1‑91 (MQ=255)

aTTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAAT                                                                                            >  1:2586243‑M1/1‑91 (MQ=255)

 tttGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATg                                                                                           <  1:1676389/91‑1 (MQ=255)

  ttGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGa                                                                                          <  1:764940/91‑1 (MQ=255)

  ttGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGa                                                                                          <  1:764953/91‑1 (MQ=255)

    gCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAgg                                                                                        >  1:49421/1‑91 (MQ=255)

    gCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAgg                                                                                        >  1:3915934/1‑91 (MQ=255)

    gCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAgg                                                                                        >  1:2738908/1‑91 (MQ=255)

    gCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAgg                                                                                        <  1:1179277/91‑1 (MQ=255)

    gCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAgg                                                                                        >  1:503893/1‑91 (MQ=255)

     cGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGc                                                                                       <  1:553022/91‑1 (MQ=255)

     cGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGc                                                                                       >  1:112998/1‑91 (MQ=255)

     cGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGc                                                                                       >  1:1863805/1‑91 (MQ=255)

        tAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTgg                                                                                    <  1:2954376/91‑1 (MQ=255)

          aTTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGaa                                                                                  <  1:2850562/91‑1 (MQ=255)

          aTTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGaa                                                                                  >  1:2759102/1‑91 (MQ=255)

              ttgGACCACAGTTTGTGCTAATTTCGGAGCTAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTgg                                                                              >  1:1515948/1‑91 (MQ=255)

              ttgGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTgg                                                                              <  1:1567224/91‑1 (MQ=255)

               tgGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGc                                                                             >  1:1184836/1‑91 (MQ=255)

               tgGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGc                                                                             >  1:2098809/1‑91 (MQ=255)

               tgGACCACAGTTTGTGCTAATTTCGGAGATAACGTAACTAAATATTGTATTCTTTGCATCGTATTCAATAGGAAATGAGGCTGGAGtttat                                                                             >  1:3859611/1‑88 (MQ=255)

                ggACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCg                                                                            <  1:4016702/91‑1 (MQ=255)

                  aCCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGtt                                                                          >  1:1140820/1‑91 (MQ=255)

                    cacaGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCt                                                                        <  1:537034/91‑1 (MQ=255)

                    cacaGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCt                                                                        <  1:2999859/91‑1 (MQ=255)

                    cacaGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCt                                                                        <  1:1082034/91‑1 (MQ=255)

                     acaGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATagaacgccaattccagcctca                                                                       <  1:3621430‑M1/91‑22 (MQ=255)

                      caGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTat                                                                      <  1:3040334‑M2/91‑3 (MQ=255)

                      caGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTat                                                                      <  1:1365061‑M2/91‑3 (MQ=255)

                      caGTTTGTGCTAATTTCGGAGATAACGTAATAAATTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTat                                                                      <  1:1836862‑M2/91‑3 (MQ=255)

                       aGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatt                                                                     >  1:3773418‑M2/1‑88 (MQ=255)

                        gTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTattt                                                                    >  1:256091‑M2/1‑87 (MQ=255)

                         tttGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttc                                                                   <  1:3410135‑M2/91‑6 (MQ=255)

                         tttGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttc                                                                   <  1:3436768‑M2/91‑6 (MQ=255)

                          ttGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATagaacgccaattccagcctcatttcc                                                                  <  1:3646920‑M1/91‑27 (MQ=255)

                          ttGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATagaacgccaattccagcctcatttcc                                                                  <  1:3647025‑M1/91‑27 (MQ=255)

                           tgtgCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttcct                                                                 <  1:1192331‑M2/91‑8 (MQ=255)

                           tgtgCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttcct                                                                 >  1:3695110‑M2/1‑84 (MQ=255)

                                tAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATagaacgccaattccagcctcatttcctattca                                                            <  1:2792565‑M1/91‑33 (MQ=255)

                                 aaTTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACt                                                           <  1:2315041/91‑1 (MQ=255)

                                  aTTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTg                                                          >  1:567299/1‑91 (MQ=255)

                                     tCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAat                                                       <  1:1359004/91‑1 (MQ=255)

                                       ggAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAatat                                                     <  1:2652725/91‑1 (MQ=255)

                                          gaTAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCAc                                                  >  1:75930/1‑91 (MQ=255)

                                          gaTAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCAc                                                  >  1:76055/1‑91 (MQ=255)

                                            tAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGc                                                >  1:493146/1‑91 (MQ=255)

                                              aCGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCaa                                              >  1:724416/1‑91 (MQ=255)

                                              aCGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCaa                                              >  1:4104623/1‑91 (MQ=255)

                                               cGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAg                                             <  1:2319242/91‑1 (MQ=255)

                                                gTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGc                                            <  1:1033761/91‑1 (MQ=255)

                                                      aaaTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGtt                                      >  1:2234583/1‑91 (MQ=255)

                                                      aaaTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGtt                                      <  1:4061252/91‑1 (MQ=255)

                                                      aaaCATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGtt                                      <  1:3218422/91‑1 (MQ=255)

                                                       aaTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTc                                     <  1:1235609/91‑1 (MQ=255)

                                                        atatTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTAGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCt                                    >  1:3600981/1‑91 (MQ=255)

                                                         tattgtattgTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTg                                   <  1:3651072/91‑1 (MQ=255)

                                                         tattgtattgTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTg                                   >  1:2818534/1‑91 (MQ=255)

                                                            tgtattgtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTAt                                >  1:936310/1‑91 (MQ=255)

                                                              tattgtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGc                              <  1:43105/91‑1 (MQ=255)

                                                               attgtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCt                             >  1:1105412/1‑91 (MQ=255)

                                                                ttgtTTGCATCGTATTGAATAGGAAATGAGGTTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTc                            <  1:2677699/91‑1 (MQ=255)

                                                                    ttGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATa                        <  1:3137279/91‑1 (MQ=255)

                                                                    ttGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATa                        >  1:271621/1‑91 (MQ=255)

                                                                     tGCATCGTATTGCATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAg                       >  1:3187821/1‑91 (MQ=255)

                                                                     tGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAg                       >  1:4071692/1‑91 (MQ=255)

                                                                     tGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAg                       <  1:2803579/91‑1 (MQ=255)

                                                                      gCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGa                      >  1:2881845/1‑91 (MQ=255)

                                                                       cATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGaa                     >  1:1806323/1‑91 (MQ=255)

                                                                            tATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGAt                <  1:2542300/91‑1 (MQ=255)

                                                                            tATTCAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGAt                >  1:3281012/1‑91 (MQ=255)

                                                                               tGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaatta             <  1:2792565‑M2/91‑60 (MQ=255)

                                                                               tGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAg             <  1:2179957/91‑1 (MQ=255)

                                                                               tGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAg             <  1:2179971/91‑1 (MQ=255)

                                                                               tGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAg             >  1:395354/1‑91 (MQ=255)

                                                                                gAATAGGAAATGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattag            <  1:1212080‑M2/91‑61 (MQ=255)

                                                                                gAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGt            >  1:273018/1‑91 (MQ=255)

                                                                                 aaTAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGtt           >  1:2952458/1‑91 (MQ=255)

                                                                                  aTAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTg          >  1:926050/1‑91 (MQ=255)

                                                                                    aGGAAATagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcaca        <  1:1192331‑M1/91‑85 (MQ=255)

                                                                                    aGGAAATagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcaca        >  1:3695110‑M1/1‑7 (MQ=255)

                                                                                     ggAAATGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaa       <  1:3646920‑M2/91‑66 (MQ=255)

                                                                                     ggAAATGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaa       <  1:3646979‑M2/91‑66 (MQ=255)

                                                                                      gAAATagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaa      <  1:3410135‑M1/91‑87 (MQ=255)

                                                                                      gAAATagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaa      <  1:2118173‑M1/91‑87 (MQ=255)

                                                                                      gAAATagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaa      <  1:3436768‑M1/91‑87 (MQ=255)

                                                                                      gAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCa      <  1:2832506/91‑1 (MQ=255)

                                                                                      gAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCa      >  1:118686/1‑91 (MQ=255)

                                                                                       aaaTagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaac     >  1:256091‑M1/1‑4 (MQ=255)

                                                                                       aaaTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAt     <  1:2878298/91‑1 (MQ=255)

                                                                                       aaaTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAt     >  1:2227761/1‑91 (MQ=255)

                                                                                       aaaTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAt     >  1:2227935/1‑91 (MQ=255)

                                                                                       aaaTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAt     >  1:28707/1‑91 (MQ=255)

                                                                                         aTagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaactg   <  1:1365061‑M1/91‑90 (MQ=255)

                                                                                         aTagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaactg   <  1:3040334‑M1/91‑90 (MQ=255)

                                                                                         aTagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaactg   >  1:2706922‑M1/1‑2 (MQ=255)

                                                                                         aTagaacgccaattccagcctcatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaactg   <  1:2716240‑M1/91‑90 (MQ=255)

                                                                                          tGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaactgt  <  1:3621430‑M2/91‑71 (MQ=255)

                                                                                          tGAGGCTGGAATTGGCGTTCTATTTCCTTTAGCTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTg  >  1:1827395/1‑91 (MQ=255)

                                                                                          tGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTg  >  1:2584561/1‑91 (MQ=255)

                                                                                          tGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTg  >  1:3066317/1‑91 (MQ=255)

ATTTGCGATAATTGTTGGACCACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTG  >  USA300TCH1516_ALE/257858‑258038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.