BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 257948	79 (0.800)	6 (0.070)	4/146	NT	6.9%	coding (974/1557 nt)	USA300HOU_RS01140	putative sensor‑like histidine kinase
*	?	USA300TCH1516_ALE	= 257968	89 (0.990)	6 (0.070)	4/146	NT	6.9%	coding (954/1557 nt)	USA300HOU_RS01140	putative sensor‑like histidine kinase

Only 100 of 116 total aligned reads displayed.

CACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATCGTAAATA  >  USA300TCH1516_ALE/257878‑258058

cacaGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCt                                                                                            <  1:1082034/91‑1 (MQ=255)

cacaGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCt                                                                                            <  1:2999859/91‑1 (MQ=255)

cacaGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCt                                                                                            <  1:535147/91‑1 (MQ=255)

cacaGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCt                                                                                            <  1:537034/91‑1 (MQ=255)

  caGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTat                                                                                          <  1:3040334‑M2/91‑3 (MQ=255)

  caGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTat                                                                                          <  1:1365061‑M2/91‑3 (MQ=255)

  caGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTat                                                                                          <  1:2716240‑M2/91‑3 (MQ=255)

  caGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTat                                                                                          >  1:2706922‑M2/1‑89 (MQ=255)

  caGTTTGTGCTAATTTCGGAGATAACGTAATAAATTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTat                                                                                          <  1:1836862‑M2/91‑3 (MQ=255)

   aGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatt                                                                                         >  1:3773418‑M2/1‑88 (MQ=255)

    gTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTattt                                                                                        >  1:256091‑M2/1‑87 (MQ=255)

     tttGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttc                                                                                       <  1:3436768‑M2/91‑6 (MQ=255)

     tttGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttc                                                                                       <  1:2118173‑M2/91‑6 (MQ=255)

     tttGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttc                                                                                       <  1:3410135‑M2/91‑6 (MQ=255)

       tgtgCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttcct                                                                                     >  1:3695110‑M2/1‑84 (MQ=255)

       tgtgCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttcct                                                                                     <  1:1192331‑M2/91‑8 (MQ=255)

             aaTTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACt                                                                               <  1:2315041/91‑1 (MQ=255)

              aTTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTg                                                                              >  1:567085/1‑91 (MQ=255)

              aTTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTg                                                                              >  1:567299/1‑91 (MQ=255)

                 tCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAat                                                                           <  1:1359004/91‑1 (MQ=255)

                   ggAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAatat                                                                         <  1:2652725/91‑1 (MQ=255)

                   ggAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAatat                                                                         <  1:2755849/91‑1 (MQ=255)

                    gagaTAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATc                                                                        >  1:315015/1‑91 (MQ=255)

                    gagaTAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATc                                                                        >  1:764665/1‑91 (MQ=255)

                      gaTAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCAc                                                                      >  1:75930/1‑91 (MQ=255)

                      gaTAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCAc                                                                      >  1:76055/1‑91 (MQ=255)

                        tAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGc                                                                    >  1:493146/1‑91 (MQ=255)

                        tAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGc                                                                    >  1:298902/1‑91 (MQ=255)

                          aCGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCaa                                                                  >  1:4104623/1‑91 (MQ=255)

                           cGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAg                                                                 <  1:3442393/91‑1 (MQ=255)

                           cGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAg                                                                 <  1:2319242/91‑1 (MQ=255)

                           cGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAg                                                                 <  1:257132/91‑1 (MQ=255)

                            gTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGc                                                                <  1:1033761/91‑1 (MQ=255)

                             tAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCg                                                               <  1:2390716/91‑1 (MQ=255)

                                  aaaTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGtt                                                          >  1:2234583/1‑91 (MQ=255)

                                  aaaTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGtt                                                          >  1:2235035/1‑91 (MQ=255)

                                  aaaTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGtt                                                          <  1:4061252/91‑1 (MQ=255)

                                  aaaCATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGtt                                                          <  1:3218422/91‑1 (MQ=255)

                                   aaTATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTc                                                         <  1:1235609/91‑1 (MQ=255)

                                    atatTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTAGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCt                                                        >  1:3600981/1‑91 (MQ=255)

                                     tattgtattgTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTg                                                       >  1:2818534/1‑91 (MQ=255)

                                        tgtattgtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTAt                                                    >  1:936310/1‑91 (MQ=255)

                                         gtattgtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATg                                                   >  1:2912859/1‑91 (MQ=255)

                                          tattgtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGc                                                  <  1:43105/91‑1 (MQ=255)

                                           attgtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCt                                                 >  1:187540/1‑91 (MQ=255)

                                           attgtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCt                                                 >  1:1105412/1‑91 (MQ=255)

                                              gtTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGa                                              >  1:4081519/1‑91 (MQ=255)

                                               tttGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGAt                                             <  1:3867137/91‑1 (MQ=255)

                                               tttGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGAt                                             <  1:791811/91‑1 (MQ=255)

                                                ttGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATa                                            >  1:271621/1‑91 (MQ=255)

                                                ttGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATa                                            <  1:3137279/91‑1 (MQ=255)

                                                 tGCATCGTATTGCATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAg                                           >  1:3187821/1‑91 (MQ=255)

                                                 tGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAg                                           >  1:4071692/1‑91 (MQ=255)

                                                 tGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAg                                           <  1:2803579/91‑1 (MQ=255)

                                                  gCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGa                                          >  1:2881845/1‑91 (MQ=255)

                                                   cATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGaa                                         >  1:1806323/1‑91 (MQ=255)

                                                    aTCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAAt                                        <  1:2831833/91‑1 (MQ=255)

                                                        tATTCAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGAt                                    >  1:3281012/1‑91 (MQ=255)

                                                           tGAATAGGAAATGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaatta                                 <  1:2792565‑M2/91‑60 (MQ=255)

                                                           tGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAg                                 <  1:2179971/91‑1 (MQ=255)

                                                           tGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAg                                 <  1:2179957/91‑1 (MQ=255)

                                                           tGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAg                                 >  1:395354/1‑91 (MQ=255)

                                                           tGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAg                                 <  1:3625797/91‑1 (MQ=255)

                                                            gAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGt                                >  1:273018/1‑91 (MQ=255)

                                                            gAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGt                                <  1:3434367/91‑1 (MQ=255)

                                                             aaTAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGtt                               >  1:2952458/1‑91 (MQ=255)

                                                              aTAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTg                              >  1:926050/1‑91 (MQ=255)

                                                                aGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCt                            <  1:1412687/91‑1 (MQ=255)

                                                                 ggAAATGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaa                           <  1:3646920‑M2/91‑66 (MQ=255)

                                                                 ggAAATGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaa                           <  1:3646979‑M2/91‑66 (MQ=255)

                                                                 ggAAATGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaa                           <  1:3647025‑M2/91‑66 (MQ=255)

                                                                  gAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCa                          >  1:119160/1‑91 (MQ=255)

                                                                  gAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCa                          >  1:118686/1‑91 (MQ=255)

                                                                  gAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCa                          <  1:2832506/91‑1 (MQ=255)

                                                                   aaaTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAt                         <  1:633822/91‑1 (MQ=255)

                                                                   aaaTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAt                         >  1:2227799/1‑91 (MQ=255)

                                                                   aaaTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAt                         >  1:2227935/1‑91 (MQ=255)

                                                                   aaaTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAt                         >  1:28707/1‑91 (MQ=255)

                                                                     aTGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCAttt                       <  1:2603410/91‑1 (MQ=255)

                                                                      tGAGGCTGGAATTGGCGTTCTatttcctattcaatacgatgcaaacaatacaatatttaattacgttatctccgaaattagcacaaactgt                      <  1:3621430‑M2/91‑71 (MQ=255)

                                                                      tGAGGCTGGAATTGGCGTTCTATTTCCTTTAGCTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTg                      >  1:1827395/1‑91 (MQ=255)

                                                                      tGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTg                      >  1:2584561/1‑91 (MQ=255)

                                                                      tGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTg                      >  1:3066317/1‑91 (MQ=255)

                                                                       gAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGa                     >  1:3016022/1‑91 (MQ=255)

                                                                         ggCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGAtt                   >  1:393899/1‑91 (MQ=255)

                                                                           cTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCa                 <  1:1033898/91‑1 (MQ=255)

                                                                            tGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCaa                <  1:3977487/91‑1 (MQ=255)

                                                                            tGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCaa                <  1:1652921/91‑1 (MQ=255)

                                                                            tGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCaa                >  1:2660382/1‑91 (MQ=255)

                                                                              gAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCaaat              <  1:365848/91‑1 (MQ=255)

                                                                              gAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCaaat              <  1:2902917/91‑1 (MQ=255)

                                                                               aaTTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCaaata             <  1:1436550/91‑1 (MQ=255)

                                                                                   ggCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATc         >  1:2178985/1‑91 (MQ=255)

                                                                                   ggCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATc         >  1:2178711/1‑91 (MQ=255)

                                                                                   ggCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATc         >  1:1542485/1‑91 (MQ=255)

                                                                                     cGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATCGt       >  1:1590398/1‑91 (MQ=255)

                                                                                       ttCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATCGTaa     >  1:3886802/1‑91 (MQ=255)

                                                                                       ttCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATCGTaa     >  1:2870827/1‑91 (MQ=255)

                                                                                          tATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATCGTAAata  >  1:3541371/1‑91 (MQ=255)

                                                                                          tATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATCGTAAata  <  1:1373318/91‑1 (MQ=255)

CACAGTTTGTGCTAATTTCGGAGATAACGTAATTAAATATTGTATTGTTTGCATCGTATTGAATAGGAAATGAGGCTGGAATTGGCGTTCTATTTCCTTTAACTGAATATCACGCAAGCGACGTTCTGTATGCTCGATAGAATGGATCAGTTGCTCATTTGATTCAAATAAATCGTAAATA  >  USA300TCH1516_ALE/257878‑258058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.