| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 263523 = | 91 (0.930) | 9 (0.100) | 6/140 | NT | 11.2% | intergenic (+22/‑314) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic |
| ? | USA300TCH1516_ALE | 263561 = | 63 (0.730) | intergenic (+60/‑276) | pflA/ugpQ_2 | Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic | |||||
TGTAGAAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/263621‑263523‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatatgc‑ttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTA > USA300TCH1516_ALE/263561‑263650 TGTAGAAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGC < 1:490711/91‑1 GTAGAAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCA < 1:780164/91‑1 TAGAAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCAT < 1:163741/91‑1 GAAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATAT > 1:3599755/1‑91 AAGTTGTCTCATATGCTTACTACGTCTTGCTAATACTCAATACTCGATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATG < 1:3750559/91‑1 AAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATG < 1:1101809/91‑1 AAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATG < 1:581614/91‑1 AAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATG < 1:4041559/91‑1 AGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC < 1:3467992/91‑1 AGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC < 1:151347/91‑1 ggTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑T < 1:4014720/89‑1 GTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑T < 1:345113/91‑1 GTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑T < 1:1580869/91‑1 GTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑T > 1:4018182/1‑91 GTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑T > 1:1546400/1‑91 GTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑T < 1:122587/91‑1 CTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGT > 1:922819/1‑91 AAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGA > 1:4109375/1‑91 GCATATGCCCCTTCACTCTTGAAGTTGCATATGCTTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAC > 1:1570211/1‑91 CATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTT > 1:113535/1‑91 CATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTT > 1:113644/1‑91 CATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTAAATGAGACAACTT > 1:113979/1‑91 ATGCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTA > 1:1375416/1‑91 GCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACA > 1:2520192/1‑91 GCCCCTTCACTCTTGAAGTTGCATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACA > 1:1908535/1‑91 CATATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTT < 1:1519351/91‑1 ATGC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGT > 1:1964892/1‑91 ATGC‑TTCTTTTTCAATTGAGTACTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGT > 1:2583676/1‑91 GC‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAA < 1:391510/91‑1 C‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAG < 1:4105962/91‑1 C‑TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAG < 1:722461/91‑1 TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTCAGT > 1:3731809/1‑91 TTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTCAGT > 1:3731708/1‑91 TCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTA > 1:1803514/1‑91 TCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTA > 1:4124601/1‑91 TGTAGAAGTTGTCTCATATACTTACTACGTCTTGCTAATACTCAATACTCAATTGAAAAAGAAGCATATGCCCCTTCACTCTTGAAGTTGCATATGC‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/263621‑263523‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatatgc‑ttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTA > USA300TCH1516_ALE/263561‑263650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |