BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	263523 =	91 (0.930)	9 (0.100)	6/140	NT	11.2%	intergenic (+22/‑314)	pflA/ugpQ_2	Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic
*	?	USA300TCH1516_ALE	263561 =	63 (0.730)	9 (0.100)	6/140	NT	11.2%	intergenic (+60/‑276)	pflA/ugpQ_2	Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic

Only 100 of 119 total aligned reads displayed.

CTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTA  >  USA300TCH1516_ALE/263471‑263650

cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc                                                                                           <  1:2902249/91‑1 (MQ=255)

cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc                                                                                           <  1:3023613/91‑1 (MQ=255)

cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc                                                                                           <  1:1174542/91‑1 (MQ=255)

 ttCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttct                                                                                          <  1:852986/91‑1 (MQ=255)

 ttCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttct                                                                                          <  1:184113/91‑1 (MQ=255)

 ttCAAAGGGAAAATTCCCGTTGAATCATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttct                                                                                          <  1:3854255/91‑1 (MQ=255)

  tctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttctt                                                                                         >  1:4109375‑M1/51‑91 (MQ=255)

   cAAAGGGAAAATTCCCGTTGAATTATAAATACTATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGTGGCATATGCTTCttt                                                                                        <  1:3543980/91‑1 (MQ=255)

    aaaGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCtttt                                                                                       >  1:2546163/1‑91 (MQ=255)

    aaaGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCtttt                                                                                       <  1:220241/91‑1 (MQ=255)

       gggAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCa                                                                                    >  1:2810266/1‑91 (MQ=255)

          aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAatt                                                                                 <  1:2783103/91‑1 (MQ=255)

          aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAatt                                                                                 <  1:725129/91‑1 (MQ=255)

          aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAatt                                                                                 >  1:119396/1‑91 (MQ=255)

          aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAatt                                                                                 <  1:2783207/91‑1 (MQ=255)

           aaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattg                                                                                >  1:2474732/1‑91 (MQ=255)

             tttCCCTTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgag                                                                              >  1:3207363/2‑91 (MQ=255)

              actacgtcttgctaatactcaatactcaattgaaaaagAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgag                                                                              >  1:922819‑M1/39‑91 (MQ=255)

                cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtat                                                                           <  1:1821834/91‑1 (MQ=255)

                cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtat                                                                           >  1:3615697/1‑91 (MQ=255)

                cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtat                                                                           <  1:1822006/91‑1 (MQ=255)

                 ccGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtatt                                                                          <  1:1351161/91‑1 (MQ=255)

                  cGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtattg                                                                         <  1:4124769/91‑1 (MQ=255)

                  cGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtattg                                                                         <  1:4125036/91‑1 (MQ=255)

                    ttGATTTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgactattgag                                                                       <  1:3805419/91‑1 (MQ=255)

                    ttGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtattgag                                                                       <  1:3805754/91‑1 (MQ=255)

                      gAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAAttgagtattgagta                                                                     <  1:651299/91‑1 (MQ=255)

                      gAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAAttgagtattgagta                                                                     <  1:2170749/91‑1 (MQ=255)

                       aaTTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATtgagtattgagtat                                                                    <  1:1261077/91‑1 (MQ=255)

                        aTTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTgagtattgagtatt                                                                   <  1:715543/91‑1 (MQ=255)

                           ataAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGc                                                                >  1:3423084/1‑91 (MQ=255)

                              aaTACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAg                                                             <  1:625490/91‑1 (MQ=255)

                               aTACAATTCAGACCGAAAAGAGA‑GCATATGGAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGa                                                            <  1:557162/91‑1 (MQ=255)

                               aTACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGa                                                            <  1:795569/91‑1 (MQ=255)

                               aTACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGa                                                            <  1:796479/91‑1 (MQ=255)

                                tACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGAc                                                           <  1:955428/91‑1 (MQ=255)

                                 aCAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACg                                                          >  1:1577345/1‑91 (MQ=255)

                                 aCAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACg                                                          <  1:2840199/91‑1 (MQ=255)

                                  cAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgt                                                         <  1:200423/91‑1 (MQ=255)

                                    aTTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtag                                                       >  1:2025639/1‑91 (MQ=255)

                                    aTTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtag                                                       <  1:2912485/91‑1 (MQ=255)

                                     ttCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagt                                                      >  1:866807/1‑91 (MQ=255)

                                      tCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagta                                                     <  1:1167623/91‑1 (MQ=255)

                                      tCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagta                                                     <  1:2575417/91‑1 (MQ=255)

                                      ctcaattgaaaaagaagcatatgccccttcactcttgaagttgcatatgctttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagt                                                      >  1:922819‑M2/54‑91 (MQ=255)

                                        aGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTagtaag                                                   >  1:3668330/1‑91 (MQ=255)

                                           ccGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGtat                                                <  1:2516104/91‑1 (MQ=255)

                                             gAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTatat                                              >  1:4090489/1‑91 (MQ=255)

                                             gAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTatat                                              <  1:3524728/91‑1 (MQ=255)

                                               aaagaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATga                                            >  1:3098113/1‑91 (MQ=255)

                                                 agaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga                                          <  1:1707323/91‑1 (MQ=255)

                                                 agaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga                                          <  1:947938/91‑1 (MQ=255)

                                                 agaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga                                          <  1:307041/91‑1 (MQ=255)

                                                  gaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGAc                                         >  1:3451063/1‑91 (MQ=255)

                                                  aagaagcatatgccccttcactcttgaagttgcatatgcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga                                          >  1:4109375‑M2/42‑91 (MQ=255)

                                                     A‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGacacc                                      <  1:4014720‑M1/91‑3 (MQ=255)

                                                     A‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAc                                      >  1:1546400‑M1/1‑91 (MQ=255)

                                                     A‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAc                                      >  1:4018182‑M1/1‑91 (MQ=255)

                                                     A‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAc                                      <  1:1580869‑M1/91‑1 (MQ=255)

                                                      gcatatgccccttcactcttgaagttgcatatgctttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAAc                                      >  1:1570211‑M2/38‑91 (MQ=255)

                                                       GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACt                                     <  1:3467992‑M1/91‑1 (MQ=255)

                                                       GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACt                                     <  1:151347‑M1/91‑1 (MQ=255)

                                                        catatgccccttcactcttgaagttgcatatgcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACtt                                    >  1:113535‑M2/36‑91 (MQ=255)

                                                        catatgccccttcactcttgaagttgcatatgcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTAAATGAGACAACtt                                    >  1:113979‑M2/36‑91 (MQ=255)

                                                        CATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACtt                                    <  1:4041559‑M1/91‑1 (MQ=255)

                                                        CATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACtt                                    <  1:1101809‑M1/91‑1 (MQ=255)

                                                        CATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACtt                                    <  1:581614‑M1/91‑1 (MQ=255)

                                                        CATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATCGAGTATTGAGTATTAGCAAGACGTAGTAAGCATATGAGACAACtt                                    <  1:3750559‑M1/91‑1 (MQ=255)

                                                         ATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTc                                   >  1:3599755‑M1/1‑91 (MQ=255)

                                                           atgccccttcactcttgaagttgcatatgcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTa                                 >  1:1375416‑M2/33‑91 (MQ=255)

                                                           ATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTa                                 <  1:163741‑M1/91‑1 (MQ=255)

                                                            TGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTAc                                <  1:780164‑M1/91‑1 (MQ=255)

                                                             gccccttcactcttgaagttgcatatgcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACa                               >  1:1908535‑M2/31‑91 (MQ=255)

                                                             gccccttcactcttgaagttgcatatgcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACa                               >  1:2520192‑M2/31‑91 (MQ=255)

                                                             GCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACa                               <  1:490711‑M1/91‑1 (MQ=255)

                                                               aaCTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAAt                             >  1:1300840/1‑91 (MQ=255)

                                                                 cTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATgg                           >  1:1642060/1‑91 (MQ=255)

                                                                 cTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATgg                           <  1:1851936/91‑1 (MQ=255)

                                                                   tCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGtt                         <  1:1778115/91‑1 (MQ=255)

                                                                    cAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTg                        <  1:1121879/91‑1 (MQ=255)

                                                                       gagTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaag                     >  1:3905317/1‑91 (MQ=255)

                                                                       gagTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaag                     >  1:3980350/1‑91 (MQ=255)

                                                                       gagTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaag                     >  1:1196690/1‑91 (MQ=255)

                                                                        agTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaagg                    <  1:3282262/91‑1 (MQ=255)

                                                                          tGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaaggaa                  <  1:166686/91‑1 (MQ=255)

                                                                          tGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaaggaa                  <  1:1419874/91‑1 (MQ=255)

                                                                          tGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaaggaa                  <  1:2728260/91‑1 (MQ=255)

                                                                           gAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTgaaggaag                 >  1:3649259/1‑91 (MQ=255)

                                                                              ggggCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACg              <  1:1003237/91‑1 (MQ=255)

                                                                              ggggCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACg              <  1:3355757/91‑1 (MQ=255)

                                                                              ggggCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACg              >  1:2463543/1‑91 (MQ=255)

                                                                               gggCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGt             >  1:1106988/1‑91 (MQ=255)

                                                                               gggCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGt             >  1:1106444/1‑91 (MQ=255)

                                                                               gggCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGt             <  1:3551737/91‑1 (MQ=255)

                                                                                  catatgcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGtttt          <  1:1519351‑M2/82‑1 (MQ=255)

                                                                                     atgcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGt       >  1:1964892‑M2/7‑91 (MQ=255)

                                                                                       gcttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTaa     <  1:391510‑M2/87‑1 (MQ=255)

                                                                                         ttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTCAGt   >  1:3731809‑M2/3‑91 (MQ=255)

                                                                                         ttCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTCAGt   >  1:3731708‑M2/3‑91 (MQ=255)

                                                                                          tCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTa  >  1:4124601‑M2/2‑91 (MQ=255)

CTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGACAACTTCTACAATGGTTGAAGGAAGACGTTTTTGTAAGTA  >  USA300TCH1516_ALE/263471‑263650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.