BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	263523 =	91 (0.930)	9 (0.100)	6/140	NT	11.2%	intergenic (+22/‑314)	pflA/ugpQ_2	Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic
*	?	USA300TCH1516_ALE	263561 =	63 (0.730)	9 (0.100)	6/140	NT	11.2%	intergenic (+60/‑276)	pflA/ugpQ_2	Pyruvate formate‑lyase‑activating enzyme/Glycerophosphodiester phosphodiesterase, cytoplasmic

Only 100 of 118 total aligned reads displayed.

GATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGAC  >  USA300TCH1516_ALE/263433‑263611

tacttacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaaga                                                                                           >  1:4124601‑M1/91‑91 (MQ=255)

 atgatgAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAaaagaaa                                                                                          >  1:1421042/1‑91 (MQ=255)

 actgacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagaa                                                                                          >  1:3731809‑M1/90‑91 (MQ=255)

  cttacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagaa‑g                                                                                        <  1:722461‑M1/3‑1 (MQ=255)

   ttacaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑Gc                                                                                       <  1:391510‑M1/4‑1 (MQ=255)

     acaaaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcagtactcaattgaaaaagAA‑GCat                                                                                     >  1:2583676‑M1/86‑91 (MQ=255)

      gaAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCata                                                                                    <  1:1990566/91‑1 (MQ=255)

      gaAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCata                                                                                    >  1:377879/1‑91 (MQ=255)

        aaaacgtcttccttcaaccattgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATg                                                                                  <  1:1519351‑M1/9‑1 (MQ=255)

        aGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATg                                                                                  >  1:786541/1‑91 (MQ=255)

         gCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGc                                                                                 <  1:1170417/91‑1 (MQ=255)

          cTGTTAAAGCAGCCTACCGTTATGTTAACTTCATAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGcc                                                                                <  1:3398433/91‑2 (MQ=255)

              tAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACtt                                                                            >  1:105509/1‑91 (MQ=255)

                aaGCAGCCTACCGTTATGTTAACTTCAAAGGGAGAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCa                                                                          <  1:3395048/91‑1 (MQ=255)

                aaGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCa                                                                          <  1:2099987/91‑1 (MQ=255)

                aaGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCa                                                                          <  1:2566799/91‑1 (MQ=255)

                aaGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCa                                                                          <  1:3852005/91‑1 (MQ=255)

                 agcagcCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCaa                                                                         <  1:2780429/91‑1 (MQ=255)

                     gcCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGt                                                                     >  1:535134/1‑91 (MQ=255)

                     gcCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGt                                                                     >  1:535135/1‑91 (MQ=255)

                     gcCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGt                                                                     >  1:2666594/1‑91 (MQ=255)

                       cTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGa                                                                   <  1:1627815/91‑1 (MQ=255)

                        tACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGaa                                                                  >  1:2218569/1‑91 (MQ=255)

                         aCCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAg                                                                 >  1:3420197/1‑91 (MQ=255)

                          ccGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAgg                                                                >  1:4104671/1‑91 (MQ=255)

                          ccGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAgg                                                                <  1:1212150/91‑1 (MQ=255)

                           cGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAggg                                                               >  1:1258874/1‑91 (MQ=255)

                           cGTTATGTTAACCTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGACggg                                                               >  1:3211408/1‑91 (MQ=255)

                            gTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAgggg                                                              <  1:1210019/91‑1 (MQ=255)

                            gTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAgggg                                                              <  1:3251957/91‑1 (MQ=255)

                             ttATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGc                                                             <  1:16334/91‑1 (MQ=255)

                             tgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATGCAACTTCAAGAGTGAAGGGGc                                                             >  1:1908535‑M1/62‑91 (MQ=255)

                             tgtagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATGCAACTTCAAGAGTGAAGGGGc                                                             >  1:2520192‑M1/62‑91 (MQ=255)

                               tagaagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATGCAACTTCAAGAGTGAAGGGGCat                                                           >  1:1375416‑M1/60‑91 (MQ=255)

                                tGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCata                                                          <  1:3675628/91‑1 (MQ=255)

                                 gTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCatat                                                         >  1:77351/1‑91 (MQ=255)

                                 gTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCatat                                                         <  1:258960/91‑1 (MQ=255)

                                  aagttgtctcatttacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATg                                                        >  1:113979‑M1/57‑91 (MQ=255)

                                  aagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATg                                                        >  1:113644‑M1/57‑91 (MQ=255)

                                  aagttgtctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATg                                                        >  1:113535‑M1/57‑91 (MQ=255)

                                    aaCTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGct                                                      <  1:2390048/91‑1 (MQ=255)

                                    aaCTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGct                                                      >  1:3996925/1‑91 (MQ=255)

                                    aaCTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGct                                                      <  1:1635979/91‑1 (MQ=255)

                                     aCTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGctt                                                     <  1:412131/91‑1 (MQ=255)

                                     aCTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGctt                                                     <  1:413848/91‑1 (MQ=255)

                                     aCTTAAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAATAG‑AA‑GCATATGCCCCTTCGCTCTTGAAGTTGCATATGcttt                                                    <  1:1968308/91‑2 (MQ=12)

                                      cTTCAAAGGGAACATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc                                                    >  1:3187136/1‑91 (MQ=255)

                                      cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc                                                    >  1:364217/1‑91 (MQ=255)

                                      cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc                                                    <  1:3023613/91‑1 (MQ=255)

                                      cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc                                                    <  1:2902249/91‑1 (MQ=255)

                                      cTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttc                                                    <  1:1174542/91‑1 (MQ=255)

                                       ttCAACGGGAATTTTCCCTTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttct                                                   >  1:1597802/1‑91 (MQ=39)

                                       ttCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttct                                                   <  1:852986/91‑1 (MQ=255)

                                       ttCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttct                                                   <  1:184113/91‑1 (MQ=255)

                                        tctcatatacttactacgtcttgctaatactcaatactcaattgaaaaagAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGcttctt                                                  >  1:4109375‑M1/51‑91 (MQ=255)

                                         cAAAGGGAAAATTCCCGTTGAATTATAAATACTATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGTGGCATATGCTTCttt                                                 <  1:3543980/91‑1 (MQ=255)

                                           aaGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCttttt                                               >  1:380411/1‑91 (MQ=255)

                                             gggAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCa                                             >  1:2810266/1‑91 (MQ=255)

                                             gggAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCa                                             >  1:1948339/1‑91 (MQ=255)

                                                aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAatt                                          <  1:725129/91‑1 (MQ=255)

                                                aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAatt                                          >  1:119396/1‑91 (MQ=255)

                                                aaaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAatt                                          <  1:2783207/91‑1 (MQ=255)

                                                 aaaTTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattg                                         >  1:2474732/1‑91 (MQ=255)

                                                   tttCCCTTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgag                                       >  1:3207363/2‑91 (MQ=255)

                                                    actacgtcttgctaatactcaatactcaattgaaaaagAAAGCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgag                                       >  1:922819‑M1/39‑91 (MQ=255)

                                                      cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtat                                    >  1:3615697/1‑91 (MQ=255)

                                                      cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtat                                    <  1:1821834/91‑1 (MQ=255)

                                                      cccGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtat                                    <  1:1822006/91‑1 (MQ=255)

                                                       ccGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtatt                                   <  1:1351161/91‑1 (MQ=255)

                                                        cGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtattg                                  <  1:4125036/91‑1 (MQ=255)

                                                        cGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtattg                                  <  1:4124769/91‑1 (MQ=255)

                                                          ttGATTTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgactattgag                                <  1:3805419/91‑1 (MQ=255)

                                                          ttGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAattgagtattgag                                <  1:3805754/91‑1 (MQ=255)

                                                            gAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAAttgagtattgagta                              <  1:2170749/91‑1 (MQ=255)

                                                             aaTTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATtgagtattgagtat                             <  1:1261077/91‑1 (MQ=255)

                                                              aTTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTgagtattgagtatt                            <  1:715543/91‑1 (MQ=255)

                                                                 ataAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGc                         >  1:3423084/1‑91 (MQ=255)

                                                                    aaTACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAg                      <  1:625490/91‑1 (MQ=255)

                                                                     aTACAATTCAGACCGAAAAGAGA‑GCATATGGAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGa                     <  1:557162/91‑1 (MQ=255)

                                                                     aTACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGa                     <  1:556940/91‑1 (MQ=255)

                                                                     aTACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGa                     <  1:795569/91‑1 (MQ=255)

                                                                      tACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGAc                    <  1:955428/91‑1 (MQ=255)

                                                                       aCAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACg                   <  1:2841360/91‑1 (MQ=255)

                                                                       aCAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACg                   >  1:1577345/1‑91 (MQ=255)

                                                                       aCAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACg                   <  1:2840199/91‑1 (MQ=255)

                                                                        cAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgt                  <  1:200423/91‑1 (MQ=255)

                                                                          aTTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtag                >  1:2025639/1‑91 (MQ=255)

                                                                           ttCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagt               >  1:866807/1‑91 (MQ=255)

                                                                            tCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagta              <  1:1167623/91‑1 (MQ=255)

                                                                            tCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACgtagta              <  1:2575417/91‑1 (MQ=255)

                                                                              aGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTagtaag            >  1:3668330/1‑91 (MQ=255)

                                                                                 ccGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGtat         <  1:2516104/91‑1 (MQ=255)

                                                                                   gAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTatat       >  1:4090489/1‑91 (MQ=255)

                                                                                     aaagaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATga     >  1:1453147/1‑91 (MQ=255)

                                                                                     aaagaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATga     >  1:3098113/1‑91 (MQ=255)

                                                                                       agaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga   <  1:307041/91‑1 (MQ=255)

                                                                                       agaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga   <  1:947938/91‑1 (MQ=255)

                                                                                       agaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATgaga   <  1:1707323/91‑1 (MQ=255)

                                                                                        gaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGAc  >  1:3451063/1‑91 (MQ=255)

                                                                                        gaaa‑gCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGAc  <  1:3949098/91‑1 (MQ=255)

GATGATGAAGCTGTTAAAGCAGCCTACCGTTATGTTAACTTCAAAGGGAAAATTCCCGTTGAATTATAAATACAATTCAGACCGAAAAGAAA‑GCATATGCAACTTCAAGAGTGAAGGGGCATATGCTTCTTTTTCAATTGAGTATTGAGTATTAGCAAGACGTAGTAAGTATATGAGAC  >  USA300TCH1516_ALE/263433‑263611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.