| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 278631 = | 103 (1.050) | 16 (0.190) | 8/140 | NT | 15.0% | intergenic (+226/+88) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB |
| ? | USA300TCH1516_ALE | 278672 = | 91 (1.060) | intergenic (+267/+47) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB | |||||
GAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/278727‑278631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAC > USA300TCH1516_ALE/278672‑278759 GAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCG < 1:2499758/91‑1 ACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTG > 1:367751/1‑91 GATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGT < 1:303018/91‑1 GATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGT < 1:302795/91‑1 GATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGT < 1:2890275/91‑1 GATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGT < 1:2484686/91‑1 ATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTT > 1:109413/1‑91 ATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTT > 1:1125348/1‑91 ATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTT > 1:305635/1‑91 ATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTT < 1:577998/91‑1 ATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTT < 1:1161704/91‑1 ATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTT > 1:487096/1‑91 TAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAACCCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT < 1:3977652/91‑1 TAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT < 1:3848031/91‑1 TAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT < 1:1300624/91‑1 AAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTA > 1:2005475/1‑91 AAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTA > 1:2005464/1‑91 CCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCG > 1:3160686/1‑91 CCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCG > 1:3160696/1‑91 CCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTATTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCG > 1:3495818/1‑91 CCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTATTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCG > 1:3495791/1‑91 ACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTT > 1:993600/1‑91 ACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTT > 1:993530/1‑91 GCCGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCA > 1:3607865/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > 1:3403595/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > 1:3417881/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > 1:2390127/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAT > 1:1133641/1‑91 AGTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGT > 1:3899075/1‑91 GTCATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTT > 1:4109731/1‑91 CATCCAATATGATTATGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGT > 1:3569517/1‑91 GCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAAT > 1:2267893/1‑91 GTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAG > 1:1725725/1‑91 TGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGA < 1:1151065/91‑1 TGGCTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGA < 1:3214524/91‑1 GGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGAT < 1:2182145/91‑1 GGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGAT > 1:1095849/1‑91 GTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATA > 1:3805125/1‑91 TTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAC < 1:2670165/91‑1 GAACGATAAGGGAGTGTGGGACATTGATTTATGTCTCAGCCCTGCTTCAACTATAAAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/278727‑278631‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAC > USA300TCH1516_ALE/278672‑278759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |