| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 278631 = | 103 (1.050) | 16 (0.190) | 8/140 | NT | 15.0% | intergenic (+226/+88) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB |
| ? | USA300TCH1516_ALE | 278672 = | 91 (1.060) | intergenic (+267/+47) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB | |||||
Only 100 of 162 total aligned reads displayed.
TAAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTA > USA300TCH1516_ALE/278543‑278721 | taAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAA < 1:2658756‑M1/91‑1 (MQ=255)gtatctatttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaaaa < 1:2670165‑M1/3‑1 (MQ=255) ctatttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCAc > 1:1725725‑M1/85‑91 (MQ=255) aTGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCAC < 1:575353‑M1/91‑1 (MQ=255) gAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGC > 1:2281899‑M1/1‑91 (MQ=255) aCATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCa > 1:3584533/1‑91 (MQ=255) aCATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCa > 1:200645/1‑91 (MQ=255) aTGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATa > 1:798749/1‑91 (MQ=255) aTGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATa > 1:767469/1‑91 (MQ=255) aTGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATa < 1:24564/91‑1 (MQ=255) aTGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATa > 1:3872501/1‑91 (MQ=255) tGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATaa < 1:3466891/91‑1 (MQ=255) tGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATaa > 1:2233756/1‑91 (MQ=255) gATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAAt > 1:3302382/1‑91 (MQ=255) aTTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATc < 1:1316101/91‑1 (MQ=255) aCTGAACGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCatat > 1:3229171/1‑91 (MQ=255) aCTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCatat < 1:207908/91‑1 (MQ=255) cTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATAtt < 1:2551150/91‑1 (MQ=255) gAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTgg < 1:2263320/91‑1 (MQ=255) gAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTgg < 1:2266365/91‑1 (MQ=255) aaGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGAt < 1:2669409/91‑1 (MQ=255) aaGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGAt > 1:341013/1‑91 (MQ=255) aGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATg > 1:2851144/1‑91 (MQ=255) gTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGa < 1:1041464/91‑1 (MQ=255) gTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGa < 1:319252/91‑1 (MQ=255) acgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACt > 1:3899075‑M1/63‑91 (MQ=255) aTGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACt > 1:1212997/1‑91 (MQ=255) tGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACtt < 1:2276410/91‑1 (MQ=255) gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc > 1:1021070/1‑91 (MQ=255) gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc > 1:2140227/1‑91 (MQ=255) taataaTCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCg > 1:3041818‑M2/1‑90 (MQ=255) attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg > 1:1133641‑M1/60‑91 (MQ=255) attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg > 1:2390127‑M1/60‑91 (MQ=255) attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg > 1:3417881‑M1/60‑91 (MQ=255) aataatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCgg > 1:827975‑M2/1‑89 (MQ=255) tgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGc > 1:3607865‑M1/58‑91 (MQ=255) ataatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggc < 1:1744455‑M2/91‑4 (MQ=255) taatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCgaagtcatccaatatgattatggcg < 1:4019878‑M1/91‑26 (MQ=255) taatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcg > 1:141326‑M2/1‑87 (MQ=255) aacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGt > 1:993530‑M1/56‑91 (MQ=255) atCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCgaagtcatccaatatgattatggcgtg < 1:2102100‑M1/91‑28 (MQ=255) tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg > 1:3159788‑M2/1‑84 (MQ=255) tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg > 1:2709979‑M2/1‑84 (MQ=255) tCATTTTATTGAAATTCATCAAACAGAAATGAATACAATCATATCAGCAGATGAAACCACGCCATAATCATATTGGATGACTTCggcgtgg > 1:1021245‑M2/1‑84 (MQ=255) cgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaTAACCACGCCATAATCATATTGGATGACTTCGGCGTgg > 1:3495818‑M1/54‑91 (MQ=255) cgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGTgg > 1:3160686‑M1/54‑91 (MQ=255) taagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttt > 1:2005475‑M1/51‑91 (MQ=255) tttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGtttt < 1:4062468/91‑1 (MQ=255) ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCTCGCCATAATCATATTGGATGACTTCGGCGTGGttttt < 1:3491642/91‑1 (MQ=255) ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttttt < 1:3940295/91‑1 (MQ=255) ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAATCCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata > 1:4135476/1‑91 (MQ=255) ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata > 1:765820/1‑91 (MQ=255) ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata < 1:2293222/91‑1 (MQ=255) tGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAg > 1:2330201/1‑91 (MQ=255) gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt < 1:967398/91‑1 (MQ=255) gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt < 1:1952306/91‑1 (MQ=255) aaaTTCATCAAACAGAAATTAATACAATCGTATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt < 1:3323534/91‑1 (MQ=255) aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt < 1:3473576/91‑1 (MQ=255) aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt < 1:2373075/91‑1 (MQ=255) aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt > 1:1836724/1‑91 (MQ=255) aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTGTTATAGTTg > 1:3979360/1‑91 (MQ=255) aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGa < 1:673530/91‑1 (MQ=255) tcatcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg < 1:1820862/91‑1 (MQ=255) tcatcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg < 1:671890/91‑1 (MQ=255) tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg > 1:3920468/1‑91 (MQ=255) tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg > 1:370067/1‑91 (MQ=255) caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg > 1:3531340/1‑91 (MQ=255) aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCATGGTTTTTATAGTTGAAGCAggg < 1:1507193/91‑1 (MQ=255) aGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga < 1:1698085/91‑1 (MQ=255) aGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga < 1:3997112/91‑1 (MQ=255) aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc < 1:2692949/91‑1 (MQ=255) aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc > 1:1499345/1‑91 (MQ=255) aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa < 1:3392281/91‑1 (MQ=255) aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa < 1:206398/91‑1 (MQ=255) tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt < 1:3049023/91‑1 (MQ=255) tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt > 1:4079983/1‑91 (MQ=255) tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTCCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt < 1:3878282/91‑1 (MQ=255) aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc < 1:771030/91‑1 (MQ=255) aTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAAt > 1:4004558/1‑91 (MQ=255) atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc < 1:4149026/91‑1 (MQ=255) atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc > 1:1081991/1‑91 (MQ=255) ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc < 1:2783502/91‑1 (MQ=255) ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc > 1:2868734/1‑91 (MQ=255) aaGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcac > 1:854840/1‑91 (MQ=255) aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca > 1:3565073/1‑91 (MQ=255) aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca < 1:2098921/91‑1 (MQ=255) gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac < 1:2605365/91‑1 (MQ=255) aaaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTc < 1:3937704/91‑1 (MQ=255) aaaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTc < 1:1175296/91‑1 (MQ=255) aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc < 1:4082109/91‑1 (MQ=255) aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc > 1:1927717/1‑91 (MQ=255) ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt > 1:2896866/1‑91 (MQ=255) ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt < 1:2505364/91‑1 (MQ=255) tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt > 1:3359487/1‑91 (MQ=255) tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt < 1:154131/91‑1 (MQ=255) tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt < 1:1651415/91‑1 (MQ=255) tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt > 1:95009/1‑91 (MQ=255) AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa < 1:1300624‑M1/91‑1 (MQ=255) AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa < 1:3848031‑M1/91‑1 (MQ=255) AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGGTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa < 1:3977652‑M1/91‑1 (MQ=255) | TAAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTA > USA300TCH1516_ALE/278543‑278721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |