BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	278631 =	103 (1.050)	16 (0.190)	8/140	NT	15.0%	intergenic (+226/+88)	USA300HOU_RS01215/gsiB	hypothetical protein/Glutathione‑binding protein GsiB
*	?	USA300TCH1516_ALE	278672 =	91 (1.060)	16 (0.190)	8/140	NT	15.0%	intergenic (+267/+47)	USA300HOU_RS01215/gsiB	hypothetical protein/Glutathione‑binding protein GsiB

Only 100 of 139 total aligned reads displayed.

TTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAC  >  USA300TCH1516_ALE/278582‑278759

tttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGtttt                                                                                         <  1:4062468/91‑1 (MQ=255)

 ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCTCGCCATAATCATATTGGATGACTTCGGCGTGGttttt                                                                                        <  1:3491642/91‑1 (MQ=255)

    ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAATCCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata                                                                                     >  1:4135476/1‑91 (MQ=255)

    ttGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTtata                                                                                     <  1:2293221/91‑1 (MQ=255)

     tGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAg                                                                                    >  1:2330201/1‑91 (MQ=255)

      gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt                                                                                   <  1:1952306/91‑1 (MQ=255)

       aaaTTCATCAAACAGAAATTAATACAATCGTATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                                  <  1:3323534/91‑1 (MQ=255)

       aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                                  >  1:1836724/1‑91 (MQ=255)

       aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                                  <  1:2376151/91‑1 (MQ=255)

       aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                                  <  1:3473576/91‑1 (MQ=255)

       aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                                  <  1:3913418/91‑1 (MQ=255)

       aaaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                                  <  1:2373075/91‑1 (MQ=255)

        aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTGTTATAGTTg                                                                                 >  1:3979360/1‑91 (MQ=255)

        aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTCTTATAGTTg                                                                                 >  1:3979618/1‑91 (MQ=255)

         aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGa                                                                                <  1:673530/91‑1 (MQ=255)

           tcatcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg                                                                              <  1:671890/91‑1 (MQ=255)

           tcatcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg                                                                              <  1:1820862/91‑1 (MQ=255)

              tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg                                                                           >  1:370067/1‑91 (MQ=255)

              tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg                                                                           >  1:3920468/1‑91 (MQ=255)

               caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg                                                                          >  1:3531340/1‑91 (MQ=255)

                aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCATGGTTTTTATAGTTGAAGCAggg                                                                         <  1:1507193/91‑1 (MQ=255)

                    aGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga                                                                     <  1:1698085/91‑1 (MQ=255)

                      aaaTTAATACAATCATATACGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTgaga                                                                   >  1:2293341/1‑91 (MQ=255)

                      aaaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTgaga                                                                   <  1:2637733/91‑1 (MQ=255)

                       aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                                  <  1:2692949/91‑1 (MQ=255)

                       aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                                  >  1:1499345/1‑91 (MQ=255)

                        aTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACa                                                                 <  1:1040565/91‑1 (MQ=255)

                           aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa                                                              >  1:2539544/1‑91 (MQ=255)

                            aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                             <  1:767133/91‑1 (MQ=255)

                            aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                             <  1:3392281/91‑1 (MQ=255)

                             tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt                                                            >  1:2688390/1‑91 (MQ=255)

                             tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt                                                            >  1:933721/1‑91 (MQ=255)

                             tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTCCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt                                                            <  1:3878282/91‑1 (MQ=255)

                              aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc                                                           <  1:675776/91‑1 (MQ=255)

                              aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc                                                           <  1:771030/91‑1 (MQ=255)

                                 aTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAAt                                                        >  1:4003784/1‑91 (MQ=255)

                                 aTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAAt                                                        >  1:4004558/1‑91 (MQ=255)

                                  tCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATg                                                       >  1:1552501/1‑91 (MQ=255)

                                    atatAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTc                                                     >  1:1081991/1‑91 (MQ=255)

                                      ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc                                                   >  1:2868734/1‑91 (MQ=255)

                                      ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc                                                   <  1:2783502/91‑1 (MQ=255)

                                        aaGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcac                                                 >  1:854840/1‑91 (MQ=255)

                                         aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                                <  1:2098921/91‑1 (MQ=255)

                                         aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                                >  1:3565057/1‑91 (MQ=255)

                                          gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac                                               <  1:2605365/91‑1 (MQ=255)

                                            aaaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTc                                             <  1:1175296/91‑1 (MQ=255)

                                            aaaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTc                                             <  1:3937704/91‑1 (MQ=255)

                                             aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc                                            <  1:4082109/91‑1 (MQ=255)

                                             aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc                                            >  1:1927717/1‑91 (MQ=255)

                                               ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                          >  1:2896866/1‑91 (MQ=255)

                                               ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                          >  1:989698/1‑91 (MQ=255)

                                                tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt                                         <  1:1651415/91‑1 (MQ=255)

                                                tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt                                         >  1:3359487/1‑91 (MQ=255)

                                                tAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCtt                                         >  1:95009/1‑91 (MQ=255)

                                                 aaaccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa                                        >  1:2005464‑M2/42‑91 (MQ=255)

                                                 aaaccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa                                        >  1:2005475‑M2/42‑91 (MQ=255)

                                                 AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa                                        <  1:1300624‑M1/91‑1 (MQ=255)

                                                 AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGGTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa                                        <  1:3977652‑M1/91‑1 (MQ=255)

                                                  AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                       >  1:305635‑M1/1‑91 (MQ=255)

                                                  AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                       >  1:487096‑M1/1‑91 (MQ=255)

                                                  AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                       <  1:577998‑M1/91‑1 (MQ=255)

                                                  AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                       <  1:1161704‑M1/91‑1 (MQ=255)

                                                  AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                       >  1:1125348‑M1/1‑91 (MQ=255)

                                                   ACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATc                                      <  1:2890275‑M1/91‑1 (MQ=255)

                                                   ACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATc                                      <  1:2484686‑M1/91‑1 (MQ=255)

                                                   ACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATc                                      <  1:303018‑M1/91‑1 (MQ=255)

                                                    ccacgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                     >  1:3160686‑M2/39‑91 (MQ=255)

                                                    ccacgccgaagtcatccaatatgattatggcgtggttaTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                     >  1:3495791‑M2/39‑91 (MQ=255)

                                                      acgccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGtt                                   >  1:993530‑M2/37‑91 (MQ=255)

                                                       CGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTc                                  <  1:2499758‑M1/91‑1 (MQ=255)

                                                        gccgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCa                                 >  1:3607865‑M2/35‑91 (MQ=255)

                                                          cgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAt                               >  1:1133641‑M2/33‑91 (MQ=255)

                                                          cgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAt                               >  1:3417881‑M2/33‑91 (MQ=255)

                                                          cgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAt                               >  1:3403595‑M2/33‑91 (MQ=255)

                                                          cgaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAAt                               >  1:2390127‑M2/33‑91 (MQ=255)

                                                             agtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgt                            >  1:3899075‑M2/30‑91 (MQ=255)

                                                              gtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                           >  1:4109731‑M2/29‑91 (MQ=255)

                                                              aTCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                           >  1:1293574/1‑91 (MQ=255)

                                                               tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                          <  1:3196646/91‑1 (MQ=255)

                                                               tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                          <  1:3114518/91‑1 (MQ=255)

                                                               tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                          <  1:3114362/91‑1 (MQ=255)

                                                               tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                          >  1:4047445/1‑91 (MQ=255)

                                                                catccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttgt                         >  1:3569517‑M2/27‑91 (MQ=255)

                                                                cATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttgt                         >  1:2279914/1‑91 (MQ=255)

                                                                   atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTCTCGTTCAATCGTTGTTCg                      >  1:1023781/1‑91 (MQ=255)

                                                                   atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCg                      <  1:2764076/91‑1 (MQ=255)

                                                                       gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa                  <  1:4011961/91‑1 (MQ=255)

                                                                       gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa                  <  1:3160083/91‑1 (MQ=255)

                                                                       gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa                  <  1:3673679/91‑1 (MQ=255)

                                                                        aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt                 <  1:3038598/91‑1 (MQ=255)

                                                                        aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt                 >  1:3209356/1‑91 (MQ=255)

                                                                         tGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATc                <  1:1412936/91‑1 (MQ=255)

                                                                               cGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTaa          >  1:1864279/1‑91 (MQ=255)

                                                                                 gcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAAt        >  1:2267893‑M2/10‑91 (MQ=255)

                                                                                   gtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAg      >  1:1725725‑M2/8‑91 (MQ=255)

                                                                                    tggcttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGa     <  1:3214524‑M2/85‑1 (MQ=255)

                                                                                     ggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGAt    <  1:2182145‑M2/86‑1 (MQ=255)

                                                                                     ggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGAt    >  1:1095849‑M2/6‑91 (MQ=255)

                                                                                      gtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATa   >  1:3805125‑M2/5‑91 (MQ=255)

                                                                                       tttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAc  <  1:2670165‑M2/88‑1 (MQ=255)

TTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAC  >  USA300TCH1516_ALE/278582‑278759

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.