| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 278640 | 100 (1.020) | 5 (0.060) | 4/140 | NT | 5.3% | intergenic (+235/+79) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB |
| ? | USA300TCH1516_ALE | = 278661 | 91 (1.060) | intergenic (+256/+58) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB | |||||
TAAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/278543‑278640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccacgccGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGATTATTA < USA300TCH1516_ALE/278661‑278572 TAAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAA < 1:2658756/91‑1 AAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACC > 1:3922863/1‑91 ATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCAC < 1:575353/91‑1 GAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGC > 1:2281899/1‑91 AATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCGAAGTCATCCAATATGATTATGG < 1:851607/91‑1 TAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCGAAGTCATCCAATATGATTATGGCG < 1:4019878/91‑1 ATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCGAAGTCATCCAATATGATTATGGCGTG < 1:2101856/91‑1 ATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCGAAGTCATCCAATATGATTATGGCGTG < 1:2102100/91‑1 ATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCGAAGTCATCCAATATGATTATGGCGTGGTT < 1:2887732/91‑1 CCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTCATCTGCTGATATGATTGTATTCATTTCTGTTTGATGAATTTCAATAAAATGA > 1:1021245/1‑91 CCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGA > 1:2709979/1‑91 CCACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGA > 1:3159788/1‑91 CACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGAT < 1:3680307/91‑1 CACGCCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGAT > 1:3941484/1‑91 CGCCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGATTA > 1:1224558/1‑91 CGCCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGATTA > 1:141326/1‑91 GCCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGATTAT < 1:1744455/91‑1 CCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGATTATT > 1:4078711/1‑91 CCGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGATTATT > 1:827975/1‑91 CGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGATTATTA > 1:3041818/1‑91 TAAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/278543‑278640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccacgccGAAGTCATCCAATATGATTATGGCGTGGTTTAATTTGCTTATATGATTGTATTAATTTCTGTTTGATGAATTTCAATAAAATGATTATTA < USA300TCH1516_ALE/278661‑278572 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |